{"id":"W6904613550","doi":"10.1371/journal.ppat.1012381.s006","title":"Fecal microbiome varies between mice bred in a commercial facility vs the University of Calgary facility (in-house) regardless of genotype.","year":2024,"lang":"en","type":"article","venue":"Figshare","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"UniFrac; Feces; Microbiome; Genetic diversity; 16S ribosomal RNA; Quartile; Species richness","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006843993,0.0006412728,0.0006804376,0.001402604,0.000815702,0.001325057,0.0005831134,0.001012915,0.008031124],"category_scores_gemma":[0.001058591,0.0004853522,0.0004883498,0.0007637547,0.0008413914,0.0006966544,0.001131703,0.001889931,0.002772982],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008804582,"about_ca_system_score_gemma":0.0007031129,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004637946,"about_ca_topic_score_gemma":0.01364549,"domain_scores_codex":[0.9981645,0.0001908231,0.0001071804,0.0006639741,0.0004659563,0.0004076296],"domain_scores_gemma":[0.9985268,0.0001068606,0.0004122611,0.0002003498,0.0002037262,0.0005499365],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.003358687,0.0003131377,0.02563109,0.0002483729,0.0001733,0.000345366,0.0002810923,0.0001100997,0.9426978,0.0007974002,0.008694756,0.01734895],"study_design_scores_gemma":[0.0002149836,0.001975333,0.6493533,0.0003329297,0.0004507716,0.00265483,0.001269531,0.0006894971,0.2958919,0.001127406,0.04588339,0.0001560934],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9105549,0.002743019,0.01864693,0.001521314,0.0008709891,0.0003492088,0.03726313,0.002819901,0.02523053],"genre_scores_gemma":[0.890101,0.002238414,0.02472265,0.00486269,0.0001116642,0.001265606,0.03440613,0.002752299,0.03953964],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008031124,"threshold_uncertainty_score":0.02686679,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04734209460460091,"score_gpt":0.2798474630687,"score_spread":0.232505368464099,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}