{"id":"W6904639335","doi":"10.1371/journal.pone.0260234.s002","title":"Multi-locus sequence types identified using whole-genome sequencing data from antimicrobial resistant <i>Escherichia coli</i> isolates obtained from raccoons, swine manure pits, and soil samples on swine farms in southern Ontario, Canada 2011–2013.","year":2021,"lang":"en","type":"article","venue":"Figshare","topic":"Pharmaceutical and Antibiotic Environmental Impacts","field":"Environmental Science","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Manure; Escherichia coli; Sequence (biology); Antimicrobial; DNA sequencing; Type (biology); Sequence analysis; Antibiotic resistance","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003062775,0.0004546213,0.0003055962,0.00245959,0.001003497,0.0007354228,0.0003095929,0.0003589949,0.003190729],"category_scores_gemma":[0.0008835332,0.0001913694,0.0004142984,0.004727916,0.0003316275,0.0001696825,0.0003159778,0.0004120924,0.0008381783],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00355574,"about_ca_system_score_gemma":0.00803212,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.7715853,"about_ca_topic_score_gemma":0.9394303,"domain_scores_codex":[0.9995467,0.00001305057,0.00002934413,0.0001146633,0.0001837825,0.0001125567],"domain_scores_gemma":[0.9988828,0.00007240994,0.0003158037,0.00005372957,0.000499599,0.0001755556],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00185379,0.0001219153,0.6403825,0.001185155,0.0005604138,0.001315038,0.002382828,0.001508787,0.2345581,0.0007538834,0.05277048,0.06260716],"study_design_scores_gemma":[0.00001619676,0.00003828882,0.9748273,0.00006735727,0.00007572235,0.000159376,0.0007117091,0.0003064048,0.002605062,0.00003457254,0.02114206,0.00001607812],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.5493553,0.0009872464,0.001567957,0.000269211,0.00007866358,0.0002218938,0.4383677,0.0001899661,0.008962197],"genre_scores_gemma":[0.5616118,0.0009984013,0.008815593,0.0003604584,0.00001617753,0.0001698692,0.4157171,0.00008567403,0.01222493],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2284147,"threshold_uncertainty_score":0.4595197,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07774173431289776,"score_gpt":0.262200967647328,"score_spread":0.1844592333344303,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}