{"id":"W6907806480","doi":"10.24433/co.1327077.v1","title":"CoBE_SMuRF (Significantly Mutated Region Finder example)","year":2021,"lang":"en","type":"other","venue":"Code Ocean","topic":"","field":"","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University Health Network","funders":"","keywords":"Code (set theory); Key (lock); Source code; Identification (biology); Capsule","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0002333466,0.0007781023,0.0008564565,0.0005616056,0.00008850535,0.0001190174,0.0006469066,0.0007905214,0.01741465],"category_scores_gemma":[0.00009936998,0.0008165462,0.0002505357,0.0007992193,0.0002504002,0.00004127691,0.0001693731,0.0006522161,0.007564991],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002323655,"about_ca_system_score_gemma":0.0003700986,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007169355,"about_ca_topic_score_gemma":0.00115996,"domain_scores_codex":[0.9965069,0.000328105,0.0004489211,0.001297368,0.0006325739,0.0007861485],"domain_scores_gemma":[0.9972613,0.00008151717,0.0005388876,0.001669872,0.0001517611,0.0002966311],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00002822349,0.0001087189,0.0003046842,0.0001684508,0.0002555912,0.0008966317,0.0001806222,0.000006326361,0.000443257,0.0004606645,0.9968613,0.000285467],"study_design_scores_gemma":[0.0009532974,0.00003658118,0.000286351,0.000756543,0.0001610267,0.00008980153,0.0001395724,0.00007841934,0.00035339,0.0001819703,0.9959748,0.0009882111],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"other","genre_gemma":"other","genre_scores_codex":[0.0005791424,0.003447354,0.0004702009,0.0001033839,0.001024902,0.0008967406,0.000705762,0.002274516,0.990498],"genre_scores_gemma":[0.009399007,0.0001562425,0.0004429093,0.0002638789,0.0007583941,0.00001106333,0.003135186,0.005109045,0.9807243],"genre_candidate":"other","genre_consensus":"other","teacher_disagreement_score":0.009849655,"threshold_uncertainty_score":0.9994285,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06396823756774354,"score_gpt":0.2762248340825249,"score_spread":0.2122565965147813,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}