{"id":"W6908901698","doi":"10.3389/fmicb.2020.00549.s001","title":"Data_Sheet_1_Systematic Evaluation of Whole Genome Sequence-Based Predictions of Salmonella Serotype and Antimicrobial Resistance.xlsx","year":2020,"lang":"en","type":"dataset","venue":"Figshare","topic":"Ecology, Conservation, and Geographical Studies","field":"Environmental Science","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Salmonella enterica; Antibiotic resistance; Serotype; Genotype; Typing; Salmonella; Whole genome sequencing; In silico; Gene","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002685937,0.0001884067,0.0004042182,0.00005852758,0.0001263807,0.00001657014,0.000305452,0.0001887343,0.03087906],"category_scores_gemma":[0.0009557535,0.0001779289,0.00006758304,0.0003987779,0.0001122487,0.00009362144,0.0002170998,0.0001468102,0.0004345135],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007148643,"about_ca_system_score_gemma":0.00008201686,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001638483,"about_ca_topic_score_gemma":0.002652559,"domain_scores_codex":[0.9983201,0.0001927035,0.0004857006,0.000375944,0.0004724466,0.0001531239],"domain_scores_gemma":[0.9988158,0.0001625736,0.0004684493,0.0003824799,0.0001070561,0.00006367383],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001127656,0.00003803787,0.0008825652,0.001895042,0.00004239975,0.000001032725,0.00002593934,0.0003826849,0.0001799552,1.272744e-7,0.9965305,0.00001045353],"study_design_scores_gemma":[0.0004659381,0.00009749955,0.06686344,0.002156964,0.0002904528,0.000001231018,0.00002575859,0.0006255255,0.00003854612,0.00003143277,0.929148,0.0002552319],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.0006412265,0.0002051976,6.048325e-7,0.0001332171,0.00005573694,0.0007754535,0.9980708,0.00001280243,0.000104914],"genre_scores_gemma":[0.00690021,0.00002567271,0.00005555579,0.0000954285,0.00003400313,0.0001639934,0.9926893,0.000008668519,0.00002718957],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.06738251,"threshold_uncertainty_score":0.9700068,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07292880923418395,"score_gpt":0.2752946738777244,"score_spread":0.2023658646435405,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}