{"id":"W6910023768","doi":"10.3929/ethz-b-000391788","title":"JASPAR 2020: update of the open-access database of transcription factor binding profiles","year":2020,"lang":"en","type":"article","venue":"Repository for Publications and Research Data (ETH Zurich)","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada; Lundbeckfonden; CHIST-ERA; Agence Nationale de la Recherche; Genome British Columbia; H. Lundbeck A/S; Western Canada Research Grid; Danmarks Frie Forskningsfond; Compute Canada; Weston Brain Institute; BC Children's Hospital; Michael Smith Health Research BC; Norges Forskningsråd; Kreftforeningen; Children's Hospital Foundation; Eidgenössische Technische Hochschule Zürich; Universitetet i Oslo; Genome Canada","keywords":"Nucleofection; Hyporeflexia; TSG101; Gestational period; Articular cartilage damage; Proteogenomics","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005198964,0.00007775588,0.0001178941,0.00004429349,0.0002782699,0.0002244964,0.002188216,0.00006759544,0.000008072217],"category_scores_gemma":[0.000307297,0.00005783993,0.00003609499,0.0003063784,0.000178476,0.00007388611,0.00206023,0.0001067099,3.564148e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00000814976,"about_ca_system_score_gemma":0.0002210892,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000611289,"about_ca_topic_score_gemma":0.00001705621,"domain_scores_codex":[0.9988685,0.0001210759,0.0002729624,0.0003897675,0.0001837352,0.0001640073],"domain_scores_gemma":[0.9984056,0.00003637415,0.0001508958,0.0009928029,0.0003199528,0.00009439428],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004498757,0.00008378534,0.002164015,0.0002376271,0.00005529296,1.071949e-7,0.00005426907,0.00000813314,0.9772628,0.001292775,0.01830204,0.0004941505],"study_design_scores_gemma":[0.0009595413,0.0003375582,0.01201906,0.00007245606,0.00005469333,0.00001233089,0.0003686575,0.006865459,0.7065881,0.0001391425,0.2723235,0.0002594783],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9812542,0.0009422848,0.003723121,0.003989869,0.00009394391,0.001399252,0.008060554,0.000007354047,0.0005294589],"genre_scores_gemma":[0.993117,0.0007307429,0.002151064,0.00003342157,0.00009120598,0.00007238929,0.003473805,0.00001661063,0.0003137286],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2706746,"threshold_uncertainty_score":0.4066287,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1600594429306965,"score_gpt":0.4072129898414558,"score_spread":0.2471535469107593,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}