{"id":"W6911063247","doi":"10.5061/dryad.f4qrfj73q","title":"Phylogenomic analyses of ochrophytes (stramenopiles) with an emphasis on neglected lineages","year":2024,"lang":"en","type":"dataset","venue":"DRYAD","topic":"","field":"","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Phylogenetic tree; Lineage (genetic); Phylogenetics; Phylogenomics; Phylogenetic comparative methods; Tree of life (biology); Sister group; Clade","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001206458,0.0009431918,0.001276514,0.001286068,0.00009388292,0.0001874142,0.0009923187,0.0004763706,0.0007020211],"category_scores_gemma":[0.000110669,0.0007462705,0.0002461467,0.001484432,0.0004022742,0.0001138647,0.0001350963,0.0008616658,0.01261112],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002316741,"about_ca_system_score_gemma":0.00041165,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001191801,"about_ca_topic_score_gemma":0.001155419,"domain_scores_codex":[0.9964219,0.0002582112,0.0007219992,0.001227599,0.0007794011,0.0005909111],"domain_scores_gemma":[0.9966958,0.0001942763,0.0006098921,0.002049168,0.0002308915,0.000220007],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0005705953,0.0006114196,0.00001132124,0.0005833653,0.001384058,0.0002751481,0.00004574974,0.0003386495,0.02697773,0.000003905436,0.968734,0.0004640708],"study_design_scores_gemma":[0.0009540927,0.004018512,0.0006845342,0.001119308,0.002996532,0.00003007445,0.00009792287,0.00008515294,0.02442957,0.00003961964,0.9643041,0.001240507],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.04698977,0.001464224,0.000001259088,0.00001316028,0.0002528668,0.0004521088,0.9504852,0.000243358,0.00009802672],"genre_scores_gemma":[0.01028721,0.0002820494,0.0003834351,0.00007277419,0.000686422,0.00006232041,0.9878539,0.0002958632,0.0000759608],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.03736874,"threshold_uncertainty_score":0.9994988,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04590008256290574,"score_gpt":0.3607278741414772,"score_spread":0.3148277915785714,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}