{"id":"W6912005719","doi":"10.5281/zenodo.15185813","title":"PREreview of \"Enhanced virulence and stress tolerance are signatures of epidemiologically successfulShigella sonnei\"","year":2025,"lang":"en","type":"peer-review","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Virulence; Lineage (genetic); Shigella sonnei; Genome; Whole genome sequencing; Gene","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.0130366,0.001169485,0.002207524,0.005515742,0.003208225,0.00693904,0.003282655,0.00412168,0.09728998],"category_scores_gemma":[0.03643735,0.001333895,0.002071934,0.001918552,0.002180851,0.003726045,0.003407431,0.004932269,0.06244073],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002725264,"about_ca_system_score_gemma":0.008410249,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001234741,"about_ca_topic_score_gemma":0.003319882,"domain_scores_codex":[0.9875597,0.002189698,0.00117655,0.001010556,0.007213677,0.0008498122],"domain_scores_gemma":[0.9288123,0.005977332,0.003437902,0.004788167,0.05053099,0.006453241],"domain_codex":null,"domain_gemma":"evaluation","domain_candidate":"evaluation","domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00007045832,0.00002437942,0.0002227186,0.001100111,0.00003905496,0.0001543701,0.00007806698,0.0000303143,0.002484936,0.001144254,0.9635061,0.03114518],"study_design_scores_gemma":[0.00001957406,0.00007090523,0.0008722941,0.000408499,0.00004066227,0.0003163447,0.00008825822,0.00004781372,0.001610545,0.0006827417,0.9958151,0.00002739815],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"editorial","genre_gemma":"other","genre_scores_codex":[0.004289781,0.09705479,0.01021593,0.1260362,0.6686938,0.00210886,0.006071061,0.00394282,0.08158685],"genre_scores_gemma":[0.03411388,0.1500624,0.01414367,0.05467688,0.2728339,0.002061175,0.01268185,0.004283687,0.4551425],"genre_candidate":"other","genre_consensus":null,"teacher_disagreement_score":0.9869634,"threshold_uncertainty_score":0.3254674,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03117767952817613,"score_gpt":0.3035582836521313,"score_spread":0.2723806041239552,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}