{"id":"W6912298647","doi":"10.5281/zenodo.14990500","title":"Genotype to Phenotype: Design of an Extensible Experimental Platform for Characterizing Microbes","year":2025,"lang":"en","type":"article","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"","keywords":"Phenotype; Microbial ecology; Genotype; Suite; Strain (injury); Predictive modelling; Extensibility","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.006075509,0.001385015,0.00123384,0.001589324,0.000580672,0.00211086,0.003059042,0.0009303188,0.002585131],"category_scores_gemma":[0.008235062,0.0009967277,0.001525949,0.00125994,0.001080502,0.002462051,0.004167831,0.00196741,0.001563335],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007826993,"about_ca_system_score_gemma":0.001791865,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001639684,"about_ca_topic_score_gemma":0.002268047,"domain_scores_codex":[0.9969698,0.0004426921,0.0004153192,0.001185934,0.0007671925,0.0002190679],"domain_scores_gemma":[0.9943907,0.001031352,0.0007990926,0.002404305,0.0009454555,0.000429131],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.003674684,0.002269515,0.08188509,0.001269143,0.0006703409,0.0007757329,0.0005881508,0.1048792,0.5967902,0.01721682,0.01413948,0.1758417],"study_design_scores_gemma":[0.0004491694,0.001875856,0.06009414,0.0002083758,0.000307734,0.0005806949,0.0004151318,0.3764303,0.4616858,0.03164252,0.06580763,0.0005026262],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.1158983,0.0001949786,0.8120684,0.0004912057,0.0002680442,0.002232465,0.03649329,0.03022567,0.002127731],"genre_scores_gemma":[0.1746095,0.0003735491,0.7453957,0.0006184442,0.00007922943,0.006445584,0.06777981,0.002778272,0.001920017],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.006075509,"threshold_uncertainty_score":0.03213078,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02476562802728993,"score_gpt":0.2560594094924664,"score_spread":0.2312937814651765,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}