{"id":"W6912465324","doi":"10.5281/zenodo.31454","title":"MetAnnotate","year":2015,"lang":"en","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Genomics and Rare Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Waterloo","funders":"","keywords":"Phylogenetic tree; Taxonomy (biology); Phylogenetics; Biological classification; Clade","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001789671,0.002367859,0.001528357,0.002060664,0.001094058,0.003271343,0.002747481,0.001178108,0.08155856],"category_scores_gemma":[0.002984269,0.001503953,0.003144142,0.001581513,0.0005136311,0.002303535,0.003684615,0.002191352,0.04628411],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001039313,"about_ca_system_score_gemma":0.00134576,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001880379,"about_ca_topic_score_gemma":0.003108541,"domain_scores_codex":[0.9991822,0.0001245976,0.0000863642,0.0002760135,0.0002244623,0.000106434],"domain_scores_gemma":[0.9993826,0.0002106327,0.00006274992,0.0002032997,0.00008671745,0.00005387101],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.002540516,0.000187457,0.006650173,0.005251128,0.00125997,0.001265138,0.001128242,0.007880818,0.04665845,0.05493152,0.6416884,0.2305581],"study_design_scores_gemma":[0.0002002611,0.00006741499,0.001772113,0.0003270864,0.0002659234,0.000643605,0.00009626261,0.01774983,0.0236951,0.02137339,0.9336841,0.0001249667],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.007121595,0.001924255,0.3035192,0.0004296698,0.0007975971,0.0002965552,0.09472916,0.5493956,0.04178639],"genre_scores_gemma":[0.06074515,0.002156149,0.3606417,0.0009513883,0.0001989959,0.001700866,0.3494347,0.1792957,0.0448753],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.08155856,"threshold_uncertainty_score":0.2728406,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0233370663989496,"score_gpt":0.240412447954743,"score_spread":0.2170753815557934,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}