{"id":"W6920542229","doi":"10.6084/m9.figshare.22620835","title":"Additional file 2 of Complete sequence verification of plasmid DNA using the Oxford Nanopore Technologies’ MinION device","year":2023,"lang":"en","type":"article","venue":"Figshare","topic":"Nanopore and Nanochannel Transport Studies","field":"Engineering","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University; University of British Columbia; Canada's Michael Smith Genome Sciences Centre","funders":"","keywords":"Minion; Nanopore sequencing; Plasmid; Sequence (biology); DNA; DNA sequencing; Nanopore","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.002635578,0.001515698,0.001686863,0.002357684,0.001506846,0.00209118,0.002832585,0.00171057,0.8658327],"category_scores_gemma":[0.02136949,0.001102323,0.0009601873,0.002902346,0.0005228972,0.002118668,0.001273204,0.001583756,0.2822768],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001180755,"about_ca_system_score_gemma":0.002282357,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004894192,"about_ca_topic_score_gemma":0.00875931,"domain_scores_codex":[0.9988303,0.0001772647,0.0001448289,0.0003239788,0.0003671203,0.0001566727],"domain_scores_gemma":[0.9819725,0.01312025,0.0006920146,0.00156725,0.002194211,0.0004537693],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003451663,0.0001254324,0.0009635416,0.002768474,0.00004191245,0.00007349049,0.00005855073,0.0006629528,0.001042701,0.001282163,0.9827422,0.009893391],"study_design_scores_gemma":[0.002245954,0.0002958591,0.008157006,0.001531714,0.0001484767,0.0004332754,0.0002526848,0.002447331,0.006049673,0.01420553,0.9640601,0.0001723285],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"dataset","genre_gemma":"methods","genre_scores_codex":[0.0002230751,0.00003243009,0.001725103,0.00009985532,0.00005415326,0.00009919216,0.9945647,0.001414541,0.001787093],"genre_scores_gemma":[0.007019649,0.0001503771,0.008535799,0.0006241875,0.00007184775,0.001492785,0.9671724,0.003498889,0.01143405],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.8658327,"threshold_uncertainty_score":0.1913733,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.09145868252713785,"score_gpt":0.2525298447798506,"score_spread":0.1610711622527127,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}