{"id":"W6920959010","doi":"10.6084/m9.figshare.17037222","title":"Additional file 1 of Promotech: a general tool for bacterial promoter recognition","year":2021,"lang":"en","type":"article","venue":"Figshare","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Memorial University of Newfoundland","funders":"","keywords":"Table (database); Promoter; Sequence (biology); Flat file database; File format","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001510232,0.002427692,0.002111463,0.002505635,0.0009545821,0.002094086,0.003285518,0.001635382,0.7510388],"category_scores_gemma":[0.01166274,0.001249255,0.001515953,0.003590933,0.0004034254,0.002242536,0.001897403,0.001801524,0.380706],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001151925,"about_ca_system_score_gemma":0.001940202,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003869424,"about_ca_topic_score_gemma":0.005951315,"domain_scores_codex":[0.9991068,0.0001287277,0.00009359914,0.0002580267,0.000279385,0.0001333596],"domain_scores_gemma":[0.99563,0.002864559,0.0002415596,0.0004738126,0.0005598002,0.0002302359],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002887095,0.00006433324,0.001223948,0.002485109,0.00005886161,0.00007596206,0.00004013359,0.0009798282,0.001127275,0.001167528,0.9788753,0.01361292],"study_design_scores_gemma":[0.00108906,0.0001603105,0.006057738,0.0009200089,0.0001266959,0.0003147697,0.0001089764,0.004713106,0.006046016,0.01126711,0.9690261,0.0001702345],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"dataset","genre_gemma":"empirical","genre_scores_codex":[0.0001920531,0.00006324445,0.00411479,0.00008184042,0.00007103058,0.0000680561,0.9832894,0.01036502,0.001754624],"genre_scores_gemma":[0.003996196,0.0001532783,0.01234181,0.0003661839,0.00007200405,0.0006656473,0.9654101,0.01039035,0.006604496],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.7510388,"threshold_uncertainty_score":0.3551129,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02298567680673627,"score_gpt":0.2268668407424916,"score_spread":0.2038811639357554,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}