{"id":"W6920972034","doi":"10.6084/m9.figshare.26751287.v1","title":"Additional file 17 of Integrative analysis of bulk and single-cell RNA sequencing reveals the gene expression profile and the critical signaling pathways of type II CPAM","year":2024,"lang":"en","type":"article","venue":"Figshare","topic":"Single-cell and spatial transcriptomics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"","keywords":"Gene expression; RNA; Gene; Signal transduction; Transcriptome; Table (database); RNA-Seq; Expression (computer science)","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00006977128,0.00009394763,0.00018504,0.00003889014,0.00006814658,0.00001438595,0.00009283401,0.0000805707,0.08465027],"category_scores_gemma":[0.0007353864,0.00005279406,0.0001010216,0.0001606949,0.00009434089,0.000005080026,0.00007914344,0.00008229107,0.000001056599],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000005640267,"about_ca_system_score_gemma":0.00006426923,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000004435672,"about_ca_topic_score_gemma":0.000003104192,"domain_scores_codex":[0.9993765,0.00006216636,0.0002024626,0.0001730932,0.0001036123,0.00008213367],"domain_scores_gemma":[0.9990261,0.0005701937,0.00007547145,0.0001320439,0.000171477,0.00002476526],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004957136,0.00002232723,0.000002166599,0.0001479497,0.00009949963,9.893961e-7,0.0004073675,0.00003856016,0.8805784,0.000009525611,0.1184274,0.0002162795],"study_design_scores_gemma":[0.0001428931,0.0001961258,0.00002521475,0.001147546,0.0001333235,0.000002867656,0.0002597185,0.002607206,0.991464,0.00007612311,0.00386213,0.00008284085],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"dataset","genre_gemma":"empirical","genre_scores_codex":[0.1026963,0.002452018,0.00002878355,0.00002796604,0.00002117859,0.0001486329,0.8935092,0.000005528723,0.001110395],"genre_scores_gemma":[0.8856997,0.00001409198,0.0005941957,0.00003107047,0.00005092111,0.00003997045,0.113435,0.000008669711,0.000126407],"genre_candidate":"dataset","genre_consensus":null,"teacher_disagreement_score":0.7830034,"threshold_uncertainty_score":0.9161865,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03081699485115273,"score_gpt":0.2408479870310977,"score_spread":0.210030992179945,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}