{"id":"W6920990028","doi":"10.6084/m9.figshare.22949448","title":"Additional file 2 of SPUMONI 2: improved classification using a pangenome index of minimizer digests","year":2023,"lang":"en","type":"article","venue":"Figshare","topic":"Cell Image Analysis Techniques","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"","keywords":"Index (typography); Statistical analysis; Indexed file; Pattern recognition (psychology)","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.002562298,0.001356305,0.001551467,0.00346354,0.001098294,0.002277064,0.002357584,0.001349166,0.8491561],"category_scores_gemma":[0.02349965,0.0007932913,0.001251149,0.004094252,0.0003326296,0.002350626,0.001508111,0.001185996,0.3469148],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001176401,"about_ca_system_score_gemma":0.002092485,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004854929,"about_ca_topic_score_gemma":0.009233309,"domain_scores_codex":[0.9989422,0.0001593862,0.0001269249,0.0003211073,0.0003174352,0.0001328525],"domain_scores_gemma":[0.9845583,0.009833364,0.0006843086,0.001333319,0.003006157,0.0005846583],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001960995,0.00002874387,0.0007950857,0.001359043,0.00002748687,0.00003615174,0.00003213998,0.0001615119,0.0003417694,0.0002981978,0.9891838,0.007539978],"study_design_scores_gemma":[0.0009414204,0.0001038714,0.009358938,0.001001244,0.0001212456,0.0003006758,0.000154728,0.00092121,0.002109742,0.003684215,0.9812045,0.00009814111],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.0001507062,0.00003975628,0.0008170274,0.0001141449,0.00006801747,0.00005429708,0.9956571,0.001902969,0.001195916],"genre_scores_gemma":[0.003678379,0.0001418142,0.00791284,0.0004433886,0.0001575687,0.0008290861,0.9716216,0.005239331,0.009975969],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.8491561,"threshold_uncertainty_score":0.2151604,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03173071043334218,"score_gpt":0.2762160163757201,"score_spread":0.2444853059423779,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}