{"id":"W6920992251","doi":"10.6084/m9.figshare.14379380","title":"Additional file 1 of PCIP-seq: simultaneous sequencing of integrated viral genomes and their insertion sites with long reads","year":2021,"lang":"en","type":"article","venue":"Figshare","topic":"T-cell and Retrovirus Studies","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Table (database); Single-nucleotide polymorphism; clone (Java method); SNP; Genome; Reference genome; SNP genotyping","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.002156797,0.002087506,0.001808639,0.002162558,0.001583738,0.002500896,0.00278337,0.00193874,0.7690228],"category_scores_gemma":[0.01448331,0.00100573,0.001227744,0.002988399,0.0005149463,0.002005898,0.001644673,0.001973791,0.1976623],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001008801,"about_ca_system_score_gemma":0.002090418,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005154811,"about_ca_topic_score_gemma":0.01058179,"domain_scores_codex":[0.9989609,0.0001450106,0.0001376195,0.0003635892,0.0002318585,0.00016105],"domain_scores_gemma":[0.9929133,0.0049489,0.0004217557,0.000623355,0.0007845333,0.0003082437],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000591428,0.0001093752,0.002961806,0.003869811,0.00007814779,0.0001655247,0.0001230244,0.001094589,0.00160298,0.0009433618,0.9772176,0.01124233],"study_design_scores_gemma":[0.004230355,0.0004446103,0.02255903,0.002121103,0.0002724208,0.0007747791,0.0005625283,0.005871403,0.006995152,0.01227456,0.9435819,0.000312101],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.0002019013,0.00002480416,0.0008299365,0.00006633786,0.00003313212,0.00006737417,0.9972675,0.0009447891,0.0005641938],"genre_scores_gemma":[0.005460431,0.0001084644,0.007800832,0.0006528571,0.00008323951,0.001434821,0.9775134,0.003022505,0.003923448],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.2309772,"threshold_uncertainty_score":0.329461,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01723430386545715,"score_gpt":0.1980122146953473,"score_spread":0.1807779108298901,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}