{"id":"W6921000823","doi":"10.6084/m9.figshare.28942877.v1","title":"Additional file 1 of Simultaneous detection of pathogens and antimicrobial resistance genes with the open source, cloud-based, CZ ID platform","year":2025,"lang":"en","type":"article","venue":"Open MIND","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"","keywords":"Gene; Workflow; Sample (material); Antibiotic resistance; Whole genome sequencing","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.002220227,0.001447158,0.001389167,0.002640445,0.001241911,0.002229224,0.002277056,0.001315432,0.7962988],"category_scores_gemma":[0.01962396,0.0006706048,0.0009163561,0.003507739,0.0004550408,0.001806357,0.001496202,0.001289626,0.1953437],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00107874,"about_ca_system_score_gemma":0.002358789,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006739721,"about_ca_topic_score_gemma":0.01017119,"domain_scores_codex":[0.9986215,0.0001587816,0.0001857335,0.0004321101,0.0004223163,0.0001795968],"domain_scores_gemma":[0.9841619,0.01113514,0.0008706854,0.001322393,0.001983256,0.0005267134],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005856447,0.0001758532,0.003294685,0.003123392,0.0000710005,0.0001317183,0.00008404504,0.0007647052,0.001534674,0.0009000261,0.9745214,0.01481292],"study_design_scores_gemma":[0.003140009,0.0004194562,0.03466547,0.002115991,0.0002674002,0.0008633255,0.0005172451,0.004768691,0.009522096,0.0112034,0.9322285,0.0002884909],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"dataset","genre_gemma":"empirical","genre_scores_codex":[0.0002776908,0.00001998207,0.001119393,0.00007743509,0.0000380834,0.0001067928,0.9964888,0.001041173,0.0008307117],"genre_scores_gemma":[0.007959375,0.00009997651,0.01074653,0.0006276644,0.0001098009,0.00163736,0.9692017,0.002733709,0.006884006],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.7962988,"threshold_uncertainty_score":0.290555,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01276163491661796,"score_gpt":0.2461349858249768,"score_spread":0.2333733509083588,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}