{"id":"W6923354990","doi":"10.1371/journal.pone.0260234.s003","title":"Serovars identified using whole-genome sequencing data from phenotypically resistant <i>Escherichia coli</i> isolates obtained from raccoons, swine manure pits, and soil samples on swine farms in southern Ontario, Canada 2011–2013.","year":2021,"lang":"en","type":"article","venue":"Figshare","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Manure; Serotype; Escherichia coli; Polymerase chain reaction; Enterobacteriaceae; Bacteria","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002887036,0.0005809859,0.0002867827,0.001639437,0.000899722,0.0006599042,0.0003232685,0.0002844963,0.006905545],"category_scores_gemma":[0.0006859273,0.0002311291,0.0003738421,0.002921095,0.000386951,0.0001933427,0.0003092996,0.0004195297,0.001946256],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002443297,"about_ca_system_score_gemma":0.006025104,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.7093826,"about_ca_topic_score_gemma":0.8722791,"domain_scores_codex":[0.9996659,0.000008167282,0.00001935425,0.00008239809,0.0001294266,0.00009481574],"domain_scores_gemma":[0.9990879,0.00005075178,0.000215416,0.00006915635,0.0004252368,0.0001515616],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.002061874,0.0001546044,0.4307519,0.001379931,0.000264951,0.001345047,0.002211211,0.0008919502,0.3734316,0.0009910562,0.1239225,0.06259337],"study_design_scores_gemma":[0.00003118228,0.00007240169,0.9477165,0.00009582496,0.0000721164,0.0002306224,0.0009270952,0.0002278026,0.00690093,0.00004895511,0.0436587,0.00001799406],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"dataset","genre_gemma":"empirical","genre_scores_codex":[0.4159081,0.0007762246,0.002406716,0.000396356,0.0001553352,0.0004003945,0.5633944,0.0003942576,0.01616819],"genre_scores_gemma":[0.4341307,0.001177584,0.009259203,0.0004985466,0.00002525202,0.0001786286,0.5318953,0.0001428563,0.02269201],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.2906174,"threshold_uncertainty_score":0.5846578,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04616211425050464,"score_gpt":0.2531028545896738,"score_spread":0.2069407403391691,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}