{"id":"W6923399169","doi":"10.1371/journal.pone.0266829.s004","title":"Distribution of plasmid incompatibility types identified using whole-genome sequence data by source type for phenotypically resistant <i>Escherichia coli</i> isolates from wildlife, swine manure pits, and environmental sources in southern Ontario, Canada, 2011−2013.","year":2022,"lang":"en","type":"article","venue":"Figshare","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Manure; Plasmid; Escherichia coli; Distribution (mathematics); Sequence (biology); Enterobacteriaceae; Type (biology)","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002791577,0.0008177817,0.0005456905,0.004787078,0.001186712,0.0008209751,0.0006770304,0.0004001409,0.01699368],"category_scores_gemma":[0.001230977,0.00033656,0.0005005563,0.01219073,0.0005562227,0.0002713007,0.0002982657,0.000624229,0.005097934],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.004195953,"about_ca_system_score_gemma":0.006249447,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.7024798,"about_ca_topic_score_gemma":0.8318556,"domain_scores_codex":[0.9994541,0.00001270515,0.0000304897,0.0001230725,0.0002450575,0.0001345241],"domain_scores_gemma":[0.9981768,0.0001339338,0.0004772946,0.0001067116,0.0008074455,0.0002978442],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.004401885,0.0002785523,0.3248113,0.003349688,0.0004377333,0.001725858,0.003291698,0.001093337,0.2781878,0.002048952,0.2752214,0.1051518],"study_design_scores_gemma":[0.00006470738,0.00007857839,0.9498127,0.0001358752,0.00006845355,0.0001732231,0.0008898508,0.0001292875,0.002819197,0.00009685127,0.04570325,0.00002808122],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"dataset","genre_gemma":"empirical","genre_scores_codex":[0.1491203,0.0009300821,0.0009792933,0.0002239549,0.0001030602,0.0002940075,0.8269281,0.0003891829,0.02103204],"genre_scores_gemma":[0.2280383,0.001510312,0.00403607,0.0002604645,0.00001885174,0.0001674408,0.7430397,0.0001516307,0.02277723],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.2975202,"threshold_uncertainty_score":0.5985446,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02519027700726629,"score_gpt":0.2375970701859201,"score_spread":0.2124067931786538,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}