{"id":"W6923579605","doi":"10.14288/1.0447776","title":"Beneath the surface: unraveling Mycobacterium abscessus morphotypes, resistance and clinical challenges in treatment","year":2025,"lang":"en","type":"article","venue":"cIRcle (University of British Columbia)","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Mycobacterium abscessus; Genotype; Immune system; Cystic fibrosis; Macrophage; Lung infection; Antibiotics; Phenotype; Bacteria","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005314202,0.0002918878,0.0005670483,0.0006232155,0.0004239735,0.001415476,0.0003072919,0.0005230278,0.0005391594],"category_scores_gemma":[0.001334759,0.0002057455,0.0001896883,0.0005413621,0.000567842,0.0005774504,0.000474071,0.0007158967,0.0001932135],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008788799,"about_ca_system_score_gemma":0.001444818,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01395337,"about_ca_topic_score_gemma":0.02949711,"domain_scores_codex":[0.9995716,0.00009334132,0.00002726845,0.00005391373,0.0001649005,0.00008893188],"domain_scores_gemma":[0.9995236,0.00007645143,0.0001327983,0.00001981936,0.0001706763,0.00007657336],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0008762137,0.0002567286,0.5028802,0.0008589114,0.00009261004,0.002817723,0.00263404,0.001097892,0.1467576,0.0007418213,0.003950239,0.337036],"study_design_scores_gemma":[0.00002369414,0.0007657572,0.9437206,0.0005897499,0.0001127485,0.00472043,0.00784912,0.003916986,0.01208194,0.001016343,0.02515914,0.00004346928],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9609061,0.02790882,0.00253508,0.00511492,0.0000652697,0.0000771392,0.0002233688,0.00006350147,0.003105701],"genre_scores_gemma":[0.9836924,0.01133986,0.003121063,0.0007343954,0.00008825702,0.00002697567,0.0001859155,0.0000212427,0.0007897976],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01395337,"threshold_uncertainty_score":0.02774435,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02928451951304946,"score_gpt":0.261688754512206,"score_spread":0.2324042349991566,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}