{"id":"W6923691263","doi":"10.1371/journal.pone.0266829.s002","title":"Multi-locus sequence types identified using whole-genome sequence data of phenotypically resistant &lt;i&gt;Escherichia coli&lt;/i&gt; isolates obtained from wildlife, swine manure pits, and environmental sources in southern Ontario, Canada, 2011−2013.","year":2022,"lang":"en","type":"article","venue":"Figshare","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Manure; Sequence (biology); Escherichia coli; Sequence analysis; Type (biology); Bacteria; Strain (injury)","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002557105,0.0005690421,0.0003965752,0.001982456,0.0008649132,0.000620716,0.0004314953,0.000370468,0.007481363],"category_scores_gemma":[0.0007515978,0.0002191573,0.000473071,0.004363455,0.0003029431,0.0001589164,0.0002020458,0.0005216221,0.002846096],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002102813,"about_ca_system_score_gemma":0.003947733,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.409967,"about_ca_topic_score_gemma":0.7523379,"domain_scores_codex":[0.9997057,0.000009545659,0.00002182101,0.00007088852,0.0001282509,0.00006372126],"domain_scores_gemma":[0.9993358,0.0000554277,0.0001797194,0.00006181697,0.0002435883,0.0001235507],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.002562067,0.0001565287,0.09076649,0.001206907,0.0002681512,0.001398012,0.001430428,0.0006893511,0.802415,0.001041276,0.0497879,0.04827797],"study_design_scores_gemma":[0.0001063778,0.0002346797,0.8901963,0.000141701,0.0002026816,0.0006021843,0.001044189,0.0005637287,0.02005283,0.0001626072,0.08664461,0.00004813362],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"dataset","genre_gemma":"empirical","genre_scores_codex":[0.3691182,0.001002716,0.004857583,0.0003306608,0.0002261803,0.0004660363,0.6094766,0.0004241444,0.01409792],"genre_scores_gemma":[0.2759381,0.001148415,0.01475706,0.0002712544,0.00002426314,0.0002115414,0.6861704,0.0001627519,0.02131625],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.590033,"threshold_uncertainty_score":0.8151615,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03914628777554965,"score_gpt":0.2497072151123664,"score_spread":0.2105609273368167,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}