{"id":"W6926359355","doi":"10.24433/co.2261649.v2","title":"CoBE_VSE (Variant Set Enrichment example)","year":2022,"lang":"en","type":"other","venue":"Code Ocean","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University Health Network","funders":"","keywords":"Set (abstract data type); Code (set theory); Source code; Data set; Column (typography); Key (lock)","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001179554,0.002029779,0.0007232236,0.002054033,0.0009349118,0.001610588,0.001891475,0.001198301,0.137663],"category_scores_gemma":[0.004650355,0.0009674131,0.001579496,0.001621289,0.0003953539,0.001756165,0.002419984,0.001103665,0.08121731],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006810666,"about_ca_system_score_gemma":0.0007788998,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003666392,"about_ca_topic_score_gemma":0.007891264,"domain_scores_codex":[0.9993163,0.00009948545,0.00004891849,0.0002131695,0.000255601,0.00006639096],"domain_scores_gemma":[0.9989008,0.0005814438,0.00004624002,0.0002242643,0.0001983206,0.00004899977],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0004347445,0.00005916871,0.002778785,0.001095975,0.0001258385,0.0005705311,0.0001663225,0.002453957,0.006127821,0.008514925,0.9078098,0.06986221],"study_design_scores_gemma":[0.0001325127,0.00004141792,0.003344951,0.0002360882,0.00006483954,0.0008630198,0.00007095302,0.01044711,0.01805435,0.01237352,0.9542685,0.0001026771],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"other","genre_scores_codex":[0.00642467,0.0009827227,0.1841173,0.001114924,0.0008117648,0.0002966357,0.2732173,0.463795,0.06923961],"genre_scores_gemma":[0.03791644,0.001190179,0.2990119,0.001648866,0.0001988105,0.0008727265,0.4265588,0.1783576,0.05424478],"genre_candidate":"other","genre_consensus":null,"teacher_disagreement_score":0.137663,"threshold_uncertainty_score":0.4605286,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01898848169637203,"score_gpt":0.235484293757491,"score_spread":0.216495812061119,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}