{"id":"W6926359355","doi":"10.24433/co.2261649.v2","title":"CoBE_VSE (Variant Set Enrichment example)","year":2022,"lang":"en","type":"other","venue":"Code Ocean","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University Health Network","funders":"","keywords":"Set (abstract data type); Code (set theory); Source code; Data set; Column (typography); Key (lock)","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001033455,0.0002083929,0.0001714643,0.00006360128,0.00008782242,0.00001609479,0.0003980082,0.0002263992,0.008078441],"category_scores_gemma":[0.00001249547,0.0002252217,0.00009943984,0.00005898798,0.00005271182,5.440841e-7,0.0004574362,0.0001423754,0.0001121825],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002553617,"about_ca_system_score_gemma":0.00007679586,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001651864,"about_ca_topic_score_gemma":0.00009178866,"domain_scores_codex":[0.9990137,0.0000684207,0.0001004454,0.0004447783,0.0001488507,0.000223808],"domain_scores_gemma":[0.9992535,0.000004164437,0.000100535,0.0005433781,0.00001254645,0.00008583486],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00002284895,0.000045007,0.001380096,0.00003579829,0.0001274121,0.00005319178,0.00003480525,0.000003118598,0.0007946713,0.0002734397,0.997,0.0002295693],"study_design_scores_gemma":[0.0003318187,0.0001256066,0.0001900437,0.000008874131,0.00003769032,0.00001789635,0.00003289743,0.000002036011,0.0004922064,0.00004135024,0.9984388,0.0002807961],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"other","genre_gemma":"other","genre_scores_codex":[0.003133946,0.005471697,0.000513037,0.0001515484,0.001125972,0.0008303651,0.003834508,0.0001381134,0.9848008],"genre_scores_gemma":[0.01526344,0.0006802027,0.0003451972,0.001003161,0.0006789041,0.00001380277,0.004837866,0.0003009192,0.9768765],"genre_candidate":"other","genre_consensus":"other","teacher_disagreement_score":0.0121295,"threshold_uncertainty_score":0.9928283,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01898848169637203,"score_gpt":0.235484293757491,"score_spread":0.216495812061119,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}