{"id":"W6927739783","doi":"10.3389/fgene.2024.1478788.s001","title":"Presentation3_Genome-wide association and functional genomic analyses for body conformation traits in North American Holstein cattle.zip","year":2024,"lang":"en","type":"article","venue":"Figshare","topic":"Genetic and phenotypic traits in livestock","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Single-nucleotide polymorphism; SNP; Quantitative trait locus; Trait; Genetic association; Bonferroni correction; Genome-wide association study; Polymorphism (computer science)","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008797437,0.0003923212,0.0004723154,0.001451803,0.0006576671,0.0006331785,0.0006507502,0.0003990626,0.106413],"category_scores_gemma":[0.001061025,0.0003254042,0.0004828189,0.001606201,0.0001349791,0.0002185544,0.0005642779,0.0003095953,0.01133886],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002634088,"about_ca_system_score_gemma":0.0006463308,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01770177,"about_ca_topic_score_gemma":0.04402384,"domain_scores_codex":[0.999745,0.00005553189,0.00001232371,0.00008396885,0.00005890416,0.00004438905],"domain_scores_gemma":[0.9992259,0.0003566629,0.00009434403,0.00009210242,0.000122909,0.0001081476],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"observational","study_design_scores_codex":[0.003634362,0.0005222892,0.262916,0.00114319,0.00073481,0.001338337,0.0007107455,0.001860076,0.03928113,0.001057026,0.4580648,0.2287372],"study_design_scores_gemma":[0.0008047518,0.000335307,0.8607933,0.00009001938,0.0003852366,0.0005345349,0.0002019099,0.005107166,0.004029312,0.0009894321,0.1266732,0.00005590497],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"dataset","genre_gemma":"empirical","genre_scores_codex":[0.238985,0.0005383715,0.01340272,0.0009300833,0.00009866032,0.0003374522,0.7241139,0.007195035,0.01439875],"genre_scores_gemma":[0.228766,0.0003735487,0.02426163,0.0004795765,0.0001643862,0.001160587,0.7007908,0.001839973,0.04216345],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.9822983,"threshold_uncertainty_score":0.355987,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03259374120965299,"score_gpt":0.2878251833091683,"score_spread":0.2552314420995154,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}