{"id":"W6929379892","doi":"10.4224/21276406","title":"Interactive visualization of orthologous genes and their annotations in plants","year":2015,"lang":"en","type":"article","venue":"NPARC","topic":"Metabolism and Genetic Disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Genome; Gene; Brachypodium; Phylogenetic tree; Synteny; Orthologous Gene; Arabidopsis; Function (biology); Phylogenetics","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003457432,0.0009535899,0.0004575043,0.002663284,0.0004899157,0.001070509,0.000555351,0.0007444864,0.01972837],"category_scores_gemma":[0.0007171527,0.0003015912,0.0006786469,0.001824144,0.0002273141,0.000825002,0.001453262,0.0007981494,0.002478578],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000385087,"about_ca_system_score_gemma":0.0004904505,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003357864,"about_ca_topic_score_gemma":0.004935294,"domain_scores_codex":[0.9998695,0.00001678353,0.000009579435,0.00003915597,0.00003716147,0.0000277987],"domain_scores_gemma":[0.9996322,0.0001513281,0.00003778904,0.00003844769,0.00007549945,0.00006465266],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.005928597,0.0004436887,0.0172923,0.005319826,0.0006043208,0.004412285,0.005901469,0.01660554,0.408724,0.01854039,0.2400174,0.2762102],"study_design_scores_gemma":[0.0008408908,0.0004354579,0.09627929,0.001520703,0.0005496058,0.004130755,0.004211921,0.1797426,0.1167223,0.0451076,0.5499226,0.0005362977],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.3301729,0.008048172,0.2689004,0.004036295,0.001350323,0.0003415459,0.1535621,0.1773413,0.05624699],"genre_scores_gemma":[0.6507132,0.003333674,0.2681648,0.0009197605,0.0002204441,0.0005882937,0.05296771,0.008847904,0.01424415],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.01972837,"threshold_uncertainty_score":0.06599796,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.014939805960952,"score_gpt":0.2794315602674787,"score_spread":0.2644917543065267,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}