{"id":"W6929834440","doi":"10.5061/dryad.pk0p2ngjx","title":"Custom MALDI-TOF Mass Spectrometric Database for identification of environmental Burkholderia and related genera","year":2020,"lang":"en","type":"dataset","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"","field":"","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University","funders":"","keywords":"Identification (biology); Isolation (microbiology); 16S ribosomal RNA; Burkholderia; Metagenomics; Mass spectrometry","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001573493,0.002540554,0.001943826,0.005374541,0.0009122195,0.002248914,0.002974795,0.002868173,0.03502802],"category_scores_gemma":[0.005260011,0.0007387713,0.001251217,0.008043876,0.0004734087,0.001390362,0.002654599,0.001563569,0.04749059],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001529467,"about_ca_system_score_gemma":0.002385627,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01055781,"about_ca_topic_score_gemma":0.01954218,"domain_scores_codex":[0.9984498,0.0001959973,0.0002438358,0.000537933,0.0003803296,0.0001920891],"domain_scores_gemma":[0.9979813,0.0005265306,0.0003848273,0.0004411274,0.0004438313,0.0002223912],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0008396754,0.0001123512,0.00851682,0.005362401,0.0002811271,0.0002648331,0.0001038623,0.001956346,0.003168785,0.001533793,0.9614224,0.0164375],"study_design_scores_gemma":[0.0004212653,0.00005578402,0.01192237,0.0007239358,0.0001312613,0.0003114732,0.0001187009,0.001752391,0.002055715,0.002360918,0.9800659,0.00008023665],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.0003443608,0.0001271135,0.0001973719,0.00002672996,0.00001246347,0.0000116167,0.9986396,0.0003333401,0.0003073835],"genre_scores_gemma":[0.0005250988,0.00006399725,0.0005492722,0.0000226605,0.000002217744,0.00004634139,0.998603,0.00004318883,0.0001442204],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.03502802,"threshold_uncertainty_score":0.1171803,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02709991041576075,"score_gpt":0.2373136185444538,"score_spread":0.210213708128693,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}