{"id":"W6930008102","doi":"10.5281/zenodo.1044747","title":"The Mongo Database For The Analysis Of Transcription Factor Binding Site Alterations (Manta)","year":2017,"lang":"en","type":"article","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Human genome; Genome; DNA binding site; Transcription factor; Binding site; Single-nucleotide polymorphism; Ensembl; Mutation; UniProt; 1000 Genomes Project","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00226572,0.002191672,0.002865004,0.005624062,0.000917626,0.003278531,0.00380808,0.001068995,0.05031263],"category_scores_gemma":[0.005181506,0.001226902,0.001767769,0.00531989,0.0004018061,0.001933849,0.003401688,0.001588689,0.04414406],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007570959,"about_ca_system_score_gemma":0.002204169,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004170944,"about_ca_topic_score_gemma":0.005368386,"domain_scores_codex":[0.9986187,0.0001945723,0.0002311108,0.0004937939,0.0003220323,0.0001398336],"domain_scores_gemma":[0.9981098,0.0004522785,0.0002663555,0.0007637563,0.0002016145,0.0002061888],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.002762289,0.0002118841,0.01139381,0.009869087,0.00123217,0.0005444915,0.000712355,0.002727809,0.04033419,0.01122103,0.8254803,0.09351051],"study_design_scores_gemma":[0.000421602,0.0001391985,0.009282652,0.0004756433,0.0003068106,0.0005525326,0.0001534841,0.004219132,0.01288503,0.008844962,0.9625719,0.0001470692],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"dataset","genre_gemma":"empirical","genre_scores_codex":[0.004109168,0.002165015,0.01769045,0.0001518687,0.0001435817,0.0001202837,0.9153284,0.05558816,0.004702986],"genre_scores_gemma":[0.007849749,0.0009333495,0.02284372,0.0001592036,0.00003692412,0.0004061566,0.9569229,0.009036156,0.001811866],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.05031263,"threshold_uncertainty_score":0.1683125,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05557923300322661,"score_gpt":0.3055816782723587,"score_spread":0.2500024452691321,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}