{"id":"W6930913276","doi":"10.5281/zenodo.3666653","title":"iReceptor: a Data Integration Platform to Share, Compare, and Analyze Adaptive Immune Receptor Repertoire (AIRR-seq) Data","year":2020,"lang":"en","type":"article","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"vaccines and immunoinformatics approaches","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University","funders":"","keywords":"Data integration; Repertoire; Software; System integration; Immune system; Key (lock)","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00812884,0.003128265,0.00252966,0.003176515,0.0009994735,0.004246095,0.004742444,0.001707431,0.02434442],"category_scores_gemma":[0.008588099,0.002290116,0.002569139,0.002362791,0.00065034,0.002473251,0.004158668,0.003600815,0.01907106],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008683429,"about_ca_system_score_gemma":0.002467429,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003356135,"about_ca_topic_score_gemma":0.004416839,"domain_scores_codex":[0.9976106,0.0003863355,0.0003455979,0.0006150623,0.0008878928,0.000154571],"domain_scores_gemma":[0.9963865,0.001402176,0.0002710909,0.0009009953,0.0006439934,0.0003952807],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.003107083,0.0004130383,0.007701209,0.003765434,0.002890324,0.0008762168,0.0009506564,0.0100074,0.09278204,0.01036694,0.672271,0.1948687],"study_design_scores_gemma":[0.001865987,0.0004736258,0.01214392,0.0009844792,0.001140138,0.001391423,0.000315327,0.1390588,0.1082185,0.03553209,0.6979706,0.0009051341],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.004553138,0.00110786,0.3171776,0.0006055969,0.0006379285,0.0004996211,0.07902595,0.5931024,0.003289914],"genre_scores_gemma":[0.04073385,0.001752655,0.509649,0.002470297,0.0003642184,0.003622503,0.3012488,0.1305768,0.009581803],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.02434442,"threshold_uncertainty_score":0.08144015,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1070591011905373,"score_gpt":0.2711629232309269,"score_spread":0.1641038220403896,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}