{"id":"W6931590833","doi":"10.5683/sp2/rdfv9c","title":"Data from: Viral dark matter and virus–host interactions resolved from publicly available microbial genomes","year":2021,"lang":"en","type":"dataset","venue":"Borealis","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"In silico; Genome; Metagenomics; Human virome; Virus classification; Phylogenetics; Extrachromosomal DNA; Sequence space; Prophage","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001135789,0.0009483018,0.0006800221,0.002582891,0.0007413557,0.00121197,0.001050048,0.001065181,0.00312522],"category_scores_gemma":[0.003516028,0.0002731898,0.0007835956,0.003190372,0.0003731886,0.0005581476,0.001370648,0.0009435868,0.003171152],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006474343,"about_ca_system_score_gemma":0.001010599,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007524043,"about_ca_topic_score_gemma":0.01536945,"domain_scores_codex":[0.9991454,0.0001578841,0.00008641028,0.000310037,0.0001776314,0.0001227103],"domain_scores_gemma":[0.9988546,0.0003516705,0.0002020283,0.0002602952,0.0001903278,0.0001411037],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.004668389,0.0008317883,0.2987236,0.01228537,0.001625055,0.001672133,0.0009935097,0.01616476,0.05774169,0.005801895,0.5319201,0.06757159],"study_design_scores_gemma":[0.000535797,0.000293652,0.3088708,0.0007619188,0.0004008755,0.001176971,0.001159194,0.01118659,0.01847341,0.003347141,0.6536555,0.0001382712],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.05609637,0.0009537967,0.000623726,0.0001563558,0.00003554416,0.0000305463,0.9401094,0.0005548552,0.00143939],"genre_scores_gemma":[0.02176753,0.0001481755,0.001452297,0.00003618807,0.000006025418,0.00003640244,0.9763154,0.00002885377,0.0002091875],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.007524043,"threshold_uncertainty_score":0.01496047,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03542377944402383,"score_gpt":0.2993531154223452,"score_spread":0.2639293359783214,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}