{"id":"W6939365167","doi":"10.6084/m9.figshare.26651334.v1","title":"Additional file 3 of DNA methylation modulated genetic variant effect on gene transcriptional regulation","year":2024,"lang":"en","type":"dataset","venue":"Figshare","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; University Health Network","funders":"","keywords":"DNA methylation; Gene; Genetic variants; DNA; Transcriptional regulation; Genome-wide association study; Regulation of gene expression; Epigenetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001572679,0.00161218,0.001919618,0.001823148,0.0009841725,0.002051705,0.002466482,0.001895802,0.5470381],"category_scores_gemma":[0.01485088,0.0006556785,0.001800639,0.00329231,0.000447354,0.001168719,0.00133495,0.001385215,0.08905942],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009716118,"about_ca_system_score_gemma":0.001725808,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01207284,"about_ca_topic_score_gemma":0.02576648,"domain_scores_codex":[0.999186,0.0001390956,0.0001013039,0.0003335196,0.0001179455,0.0001222057],"domain_scores_gemma":[0.9921569,0.006023948,0.0004129459,0.0005712256,0.0005408879,0.0002941455],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004327637,0.00008131336,0.007737605,0.004654233,0.0002672409,0.0001472434,0.00008335127,0.0009351415,0.0004420477,0.0008438102,0.9795104,0.004864942],"study_design_scores_gemma":[0.006743336,0.0002978877,0.04383598,0.003204106,0.001004501,0.0009467134,0.0003422981,0.002537174,0.001586598,0.01224042,0.9270872,0.0001738371],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.0001219075,0.00002738291,0.00008882283,0.00002824802,0.000009097156,0.00001078976,0.9994405,0.00009031291,0.0001828522],"genre_scores_gemma":[0.003343249,0.00008650371,0.0009896507,0.0002796473,0.00002512121,0.0003589807,0.9926426,0.0002775068,0.001996844],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.5470381,"threshold_uncertainty_score":0.6460952,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01608000767913609,"score_gpt":0.2086109888323019,"score_spread":0.1925309811531659,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}