{"id":"W6939421226","doi":"10.6084/m9.figshare.26643127","title":"Additional file 2 of Identification of plasmids in avian-associated Escherichia coli using nanopore and illumina sequencing","year":2024,"lang":"en","type":"article","venue":"Figshare","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University; University of Saskatchewan","funders":"","keywords":"Nanopore sequencing; Contig; Nanopore; Illumina dye sequencing; Genome; Plasmid; Sequence assembly","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.002330201,0.001648436,0.001861754,0.002420806,0.001606914,0.002423114,0.00298291,0.001677542,0.8380796],"category_scores_gemma":[0.01964974,0.001046694,0.001150414,0.003978353,0.0004826015,0.002197717,0.001504349,0.001629644,0.222216],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001081773,"about_ca_system_score_gemma":0.002298806,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004950783,"about_ca_topic_score_gemma":0.009159508,"domain_scores_codex":[0.9987752,0.000157017,0.0001861922,0.0003463054,0.0003501636,0.0001850723],"domain_scores_gemma":[0.9883229,0.008251475,0.0005452901,0.001056481,0.001446312,0.0003775245],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005721345,0.0001548522,0.001905742,0.004568779,0.00007423672,0.0001652858,0.0001089534,0.0008010535,0.001670341,0.001237979,0.9762368,0.01250374],"study_design_scores_gemma":[0.004484306,0.0004699464,0.02057743,0.002590152,0.0002318068,0.0007422869,0.0004225223,0.004231451,0.006786637,0.01084874,0.9483576,0.00025721],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.0002508848,0.00002045362,0.001099481,0.00006819616,0.0000400527,0.0001001835,0.9965654,0.000916256,0.0009391154],"genre_scores_gemma":[0.004961443,0.00009953698,0.008698379,0.0004923284,0.0000677557,0.001700115,0.9753009,0.002657918,0.006021707],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.8380796,"threshold_uncertainty_score":0.2309598,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02619500031155118,"score_gpt":0.2220276584134792,"score_spread":0.195832658101928,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}