{"id":"W6939475128","doi":"10.6084/m9.figshare.20479803.v1","title":"Additional file 4 of ProbeTools: designing hybridization probes for targeted genomic sequencing of diverse and hypervariable viral taxa","year":2022,"lang":"en","type":"dataset","venue":"Figshare","topic":"","field":"","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"BC Centre for Disease Control; Simon Fraser University; University of British Columbia","funders":"","keywords":"Hypervariable region; DNA sequencing; Genome; Genomics; Base sequence; Genomic sequencing; Sequencing by hybridization","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.002262505,0.002190511,0.002330281,0.004042003,0.001322667,0.003172366,0.003248158,0.002726979,0.6543443],"category_scores_gemma":[0.02058435,0.001141612,0.00173898,0.00678708,0.0006524856,0.002290344,0.001946358,0.001828792,0.1965601],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001389205,"about_ca_system_score_gemma":0.002320996,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01120894,"about_ca_topic_score_gemma":0.02001528,"domain_scores_codex":[0.9987237,0.0002362681,0.000167095,0.0004764057,0.0001957544,0.0002008554],"domain_scores_gemma":[0.9854196,0.01103321,0.0006661808,0.001152277,0.001292977,0.0004357249],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001605345,0.00003845855,0.001499953,0.004028349,0.00007734408,0.00004370424,0.00005809838,0.0005297281,0.0001734491,0.0007437628,0.9892157,0.003430826],"study_design_scores_gemma":[0.001848427,0.00006105901,0.008458434,0.00190314,0.0002139006,0.0001699518,0.0001784616,0.0007150848,0.000568576,0.007792802,0.9779936,0.00009653429],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.00003287163,0.00001680731,0.00007095656,0.00002405075,0.000006943389,0.00001130318,0.9994264,0.0001579863,0.0002526243],"genre_scores_gemma":[0.001003618,0.00006743601,0.001012514,0.0001359343,0.00001529369,0.0003219,0.9958048,0.000467601,0.001170887],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.6543443,"threshold_uncertainty_score":0.4930359,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05527856968748402,"score_gpt":0.246034398762398,"score_spread":0.190755829074914,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}