{"id":"W6939496100","doi":"","title":"Metagenomic and whole-genome analysis reveals new lineages of gokushoviruses and biogeographic separation in the sea","year":2014,"lang":"","type":"article","venue":"Open MIND","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Metagenomics; Genome; Phylogenetic tree; Phylogenetics; Subfamily; Fosmid; Clade; DNA sequencing","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001194814,0.0001760224,0.0004271153,0.0001068586,0.0001945476,0.0004469848,0.0004015462,0.0001087954,0.004145102],"category_scores_gemma":[0.0001420991,0.00007106765,0.0001138709,0.001118404,0.00003870391,0.0002860138,0.0001367888,0.0001353453,0.00009312341],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000004634208,"about_ca_system_score_gemma":0.00001170232,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007544818,"about_ca_topic_score_gemma":0.006796977,"domain_scores_codex":[0.9983832,0.0004606473,0.0004400452,0.0003940777,0.000129232,0.000192854],"domain_scores_gemma":[0.9976499,0.001856865,0.000238022,0.0001186712,0.00003621552,0.0001003043],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001332241,0.0001387683,0.703281,0.00001405722,0.0004143632,0.000003082755,0.001520062,0.00009242764,0.2232903,0.0001743278,0.0004769744,0.07046141],"study_design_scores_gemma":[0.0002266572,0.0007581437,0.7807871,0.00009551978,0.001808726,0.00002566578,0.001431875,0.001355469,0.001475383,0.0008407542,0.2107192,0.0004755252],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9922413,0.002434718,0.00001482379,0.001357535,0.0000491581,0.0004231127,0.001844018,5.922362e-7,0.001634782],"genre_scores_gemma":[0.9954429,0.002640811,0.0002383036,0.0001290809,0.0001122546,0.00000509407,0.0007237343,9.198862e-7,0.0007069399],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2218149,"threshold_uncertainty_score":0.999064,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03798745315969188,"score_gpt":0.2916671200314029,"score_spread":0.2536796668717111,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}