{"id":"W6939593567","doi":"10.6084/m9.figshare.14679696.v1","title":"A ‘deep dive’ into the SARS-Cov-2 polymerase assembly: identifying novel allosteric sites and analyzing the hydrogen bond networks and correlated dynamics","year":2021,"lang":"en","type":"article","venue":"Figshare","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"","keywords":"Allosteric regulation; Polymerase; RNA polymerase; Active site; Binding site; RNA-dependent RNA polymerase; Function (biology); DNA polymerase","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002021645,0.0003585894,0.0002846349,0.0001461005,0.0001707319,0.0003228456,0.0004055589,0.0004448071,0.001102753],"category_scores_gemma":[0.0003447638,0.0002699559,0.0004890201,0.0001827724,0.0003104749,0.0007554272,0.0002973563,0.0006326305,0.0001585635],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002314804,"about_ca_system_score_gemma":0.0003122959,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001279122,"about_ca_topic_score_gemma":0.001283607,"domain_scores_codex":[0.9999701,0.000006051994,0.000001709911,0.000007022377,0.000008539873,0.000006561612],"domain_scores_gemma":[0.9999094,0.00002943723,0.00001533162,0.00002054305,0.00001093401,0.00001427839],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0002702922,0.000154273,0.01030962,0.0003738384,0.0001071396,0.0004713041,0.0005383965,0.2077678,0.750231,0.005746131,0.0007349778,0.02329509],"study_design_scores_gemma":[0.00002584408,0.0001587567,0.009994346,0.00002453297,0.00003402598,0.0002119244,0.0001349045,0.8932701,0.09072061,0.002944476,0.002440965,0.00003957462],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8699294,0.0008053072,0.1257963,0.0004287443,0.00003072804,0.00002996526,0.0002411104,0.0005288113,0.002209658],"genre_scores_gemma":[0.9383107,0.001069154,0.05939349,0.00005368885,0.000008998478,0.00003369163,0.0004842524,0.0001109214,0.0005352556],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001279122,"threshold_uncertainty_score":0.003689051,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05709077739200451,"score_gpt":0.3326758962648657,"score_spread":0.2755851188728611,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}