{"id":"W6939608453","doi":"10.6084/m9.figshare.29105695.v1","title":"Additional file 2 of RobusTAD: reference panel based annotation of nested topologically associating domains","year":2025,"lang":"en","type":"article","venue":"Figshare","topic":"Advanced Graph Neural Networks","field":"Computer Science","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"","keywords":"Annotation; Class (philosophy); Scheme (mathematics); Domain (mathematical analysis)","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.002312328,0.001372486,0.001747642,0.004919359,0.001576706,0.003160874,0.002927897,0.001842859,0.8612525],"category_scores_gemma":[0.03541486,0.0008889049,0.001091075,0.006156748,0.0005632843,0.003120317,0.002312324,0.001547309,0.3785922],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001307694,"about_ca_system_score_gemma":0.002803769,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007218896,"about_ca_topic_score_gemma":0.01579422,"domain_scores_codex":[0.9984987,0.0002432662,0.0001996651,0.0004858764,0.0004073452,0.0001652875],"domain_scores_gemma":[0.9731411,0.01654114,0.001153057,0.003132172,0.005118226,0.0009141844],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001269866,0.00001824493,0.0006310443,0.001360026,0.00001862068,0.00004568814,0.00005046597,0.0001764341,0.0001914567,0.0007553055,0.9912208,0.005405],"study_design_scores_gemma":[0.0005965858,0.00005092045,0.005219023,0.001063616,0.00008436199,0.0002847774,0.0002309473,0.0005233065,0.00106909,0.008396165,0.9823754,0.0001057804],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.0001216889,0.00004299009,0.0008109836,0.0001319896,0.00007739316,0.00005325143,0.995538,0.00122428,0.001999372],"genre_scores_gemma":[0.005192508,0.0001867896,0.007969925,0.0005031799,0.000154349,0.0009014871,0.9699275,0.003550641,0.01161369],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.8612525,"threshold_uncertainty_score":0.1979065,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0445831827471867,"score_gpt":0.2602684865925037,"score_spread":0.215685303845317,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}