{"id":"W6939664108","doi":"10.6084/m9.figshare.22757283.v1","title":"Additional file 2 of Genome-wide assessment and mapping of inbreeding depression identifies candidate genes associated with semen traits in Holstein bulls","year":2023,"lang":"en","type":"dataset","venue":"Figshare","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"","keywords":"Inbreeding depression; Candidate gene; Runs of Homozygosity; Inbreeding; Genotype; Semen; Gene; Genetic association","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001148848,0.001209731,0.001631475,0.001838671,0.0009162771,0.001735312,0.002296128,0.001807781,0.4533269],"category_scores_gemma":[0.01147849,0.0005629275,0.001354886,0.00340225,0.0003139198,0.0009556382,0.001199862,0.001085892,0.06245035],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009134815,"about_ca_system_score_gemma":0.001479319,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01768615,"about_ca_topic_score_gemma":0.02995295,"domain_scores_codex":[0.9994187,0.00008514649,0.00009284669,0.0002223808,0.00008327185,0.0000976645],"domain_scores_gemma":[0.9939142,0.004116646,0.0005250014,0.000461321,0.0006991655,0.0002836367],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003921388,0.00009835205,0.01020173,0.00464996,0.0002387288,0.000131426,0.00009194781,0.0007021893,0.0003034557,0.0006965102,0.9776106,0.00488299],"study_design_scores_gemma":[0.00722042,0.0002899274,0.09877821,0.004058526,0.0008909253,0.0007148614,0.0004558183,0.002083721,0.001080309,0.007022513,0.8772205,0.0001841882],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.0001264648,0.0000169883,0.00003956004,0.00002237757,0.000004513922,0.000009873773,0.9996231,0.00003770039,0.0001194274],"genre_scores_gemma":[0.002690772,0.00006549335,0.0005417358,0.0001423725,0.0000159889,0.0003435558,0.9948571,0.000087392,0.001255626],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.4533269,"threshold_uncertainty_score":0.7797629,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02808937147240349,"score_gpt":0.2342585336282646,"score_spread":0.2061691621558611,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}