{"id":"W6939685365","doi":"10.6084/m9.figshare.14091246.v1","title":"Additional file 12 of Megabase-scale methylation phasing using nanopore long reads and NanoMethPhase","year":2021,"lang":"en","type":"article","venue":"Figshare","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"","keywords":"Phaser; Nanopore sequencing; Nanopore; DNA methylation; Methylation","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00313369,0.001500526,0.002163674,0.004717644,0.001402264,0.002758426,0.003171431,0.001743354,0.8322842],"category_scores_gemma":[0.02758536,0.001086923,0.001646832,0.00614806,0.0004351302,0.002994951,0.001822429,0.001647527,0.2664585],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001304775,"about_ca_system_score_gemma":0.003174227,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006130048,"about_ca_topic_score_gemma":0.0121067,"domain_scores_codex":[0.9986373,0.0002363274,0.0002118446,0.0004021754,0.0003660783,0.0001462411],"domain_scores_gemma":[0.9782856,0.01501215,0.001072182,0.001415678,0.003553002,0.0006613776],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002471348,0.00002649427,0.0006835329,0.005787228,0.0000793818,0.00007047225,0.00006691519,0.0003241785,0.0004409212,0.0007939107,0.9836076,0.007872215],"study_design_scores_gemma":[0.0009904247,0.00008668227,0.006262991,0.002738441,0.0001887812,0.0002840018,0.0001548979,0.0005707645,0.001169341,0.005240363,0.9822052,0.0001080065],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"dataset","genre_gemma":"empirical","genre_scores_codex":[0.00007916701,0.0001122391,0.0006910439,0.0001442687,0.00009572525,0.00005567976,0.9968672,0.000975038,0.0009795461],"genre_scores_gemma":[0.002576971,0.0003670258,0.005711881,0.0006685022,0.0001604494,0.000766052,0.9788678,0.002389637,0.008491822],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.8322842,"threshold_uncertainty_score":0.2392263,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03850607665244365,"score_gpt":0.2403681815801081,"score_spread":0.2018621049276645,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}