{"id":"W6939732943","doi":"10.6084/m9.figshare.16641865","title":"Additional file 1 of Effect of maternal separation and transportation stress on the bovine upper respiratory tract microbiome and the immune response to resident opportunistic pathogens","year":2021,"lang":"en","type":"article","venue":"Figshare","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan; Agriculture and Agri-Food Canada","funders":"","keywords":"Immune system; Microbiome; Respiratory tract; Fight-or-flight response; Antibody response; Metagenomics; Respiratory tract infections; Antibody","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001861951,0.001005061,0.00140162,0.002133171,0.00113475,0.001666326,0.001612792,0.001194381,0.847292],"category_scores_gemma":[0.02539103,0.0005483381,0.001210468,0.00343273,0.0002932084,0.001413984,0.0008659913,0.0009501672,0.1011208],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009675337,"about_ca_system_score_gemma":0.002253733,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01182819,"about_ca_topic_score_gemma":0.01869366,"domain_scores_codex":[0.999211,0.0001435115,0.0001286698,0.0002158159,0.0001783693,0.0001227001],"domain_scores_gemma":[0.9773309,0.01832927,0.001163891,0.0008343237,0.00187508,0.0004665542],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"observational","study_design_scores_codex":[0.0008373999,0.0002654253,0.005802848,0.007891237,0.0001360191,0.0001156178,0.0001653624,0.0007489279,0.0004772196,0.0006879395,0.970191,0.01268096],"study_design_scores_gemma":[0.01383955,0.001301421,0.118207,0.01077702,0.0008267468,0.001046971,0.001453451,0.004518576,0.002279815,0.013142,0.8322397,0.0003678366],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"dataset","genre_gemma":"other","genre_scores_codex":[0.0002265196,0.00002381025,0.0001443213,0.00005908756,0.00001726617,0.00005617688,0.9990194,0.0001171116,0.0003363191],"genre_scores_gemma":[0.01399496,0.0002541186,0.004773304,0.0006096587,0.00009812526,0.003230273,0.9675621,0.0006293617,0.008848097],"genre_candidate":"other","genre_consensus":null,"teacher_disagreement_score":0.847292,"threshold_uncertainty_score":0.2178195,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01929838123801218,"score_gpt":0.2743897799990045,"score_spread":0.2550913987609923,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}