{"id":"W6939738675","doi":"10.6084/m9.figshare.26600296","title":"Additional file 3 of MetaPro: a scalable and reproducible data processing and analysis pipeline for metatranscriptomic investigation of microbial communities","year":2024,"lang":"en","type":"article","venue":"Figshare","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; SickKids Foundation; Hospital for Sick Children","funders":"","keywords":"Pipeline (software); Chart; Annotation; Replication (statistics); Scalability; Pie chart; File format","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.003478989,0.002366874,0.001716153,0.003025024,0.001534481,0.002448315,0.003876059,0.001615247,0.6886939],"category_scores_gemma":[0.01570408,0.00116341,0.001969945,0.003888094,0.0006831315,0.002458283,0.002421645,0.002078894,0.1900762],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001090482,"about_ca_system_score_gemma":0.002633433,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00436566,"about_ca_topic_score_gemma":0.009589378,"domain_scores_codex":[0.9985092,0.0001741843,0.0002000565,0.0004828509,0.0004028315,0.0002308722],"domain_scores_gemma":[0.9915566,0.004988468,0.000606595,0.001149212,0.001174507,0.0005246354],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0007519029,0.0001218609,0.0035366,0.003387985,0.0001458482,0.0001479979,0.0001369504,0.0008226431,0.003576474,0.0008113038,0.9754583,0.01110196],"study_design_scores_gemma":[0.005114629,0.0005424438,0.03124479,0.002009003,0.0003979541,0.0008063368,0.0005436001,0.008977071,0.02002443,0.01361289,0.9162199,0.0005070084],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"other","genre_scores_codex":[0.0003467174,0.00002109963,0.002337642,0.0000715291,0.00005602937,0.0001008641,0.9896609,0.006779729,0.0006255286],"genre_scores_gemma":[0.006372721,0.00006062017,0.01613308,0.0004025169,0.0000890989,0.001187666,0.9645925,0.007873926,0.003287793],"genre_candidate":"other","genre_consensus":null,"teacher_disagreement_score":0.6886939,"threshold_uncertainty_score":0.4440404,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06912511211257995,"score_gpt":0.2501535028984896,"score_spread":0.1810283907859097,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}