{"id":"W6939763437","doi":"10.6084/m9.figshare.29455628.v1","title":"Additional file 4 of Clinical applications of and molecular insights from RNA sequencing in a rare disease cohort","year":2025,"lang":"en","type":"article","venue":"Figshare","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Children's Hospital of Eastern Ontario; Memorial University of Newfoundland; SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Table (database); Disease; Rare disease; DNA sequencing; RNA; Phenotype; Whole genome sequencing; Cohort","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.002051793,0.001033111,0.001195342,0.002246315,0.001061418,0.00158289,0.001635812,0.001693355,0.7824745],"category_scores_gemma":[0.03621977,0.0004727246,0.0009741789,0.002456454,0.000301849,0.001086086,0.001017097,0.0008804229,0.08041426],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000990332,"about_ca_system_score_gemma":0.001646942,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006118039,"about_ca_topic_score_gemma":0.009694161,"domain_scores_codex":[0.9988966,0.0002270876,0.0002373896,0.000329081,0.0001824168,0.0001273676],"domain_scores_gemma":[0.9681184,0.02553264,0.001769453,0.00197317,0.001815443,0.0007907713],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0006565231,0.0001201894,0.009582382,0.002823344,0.0001541046,0.000379114,0.000104805,0.0006977324,0.0002980002,0.0009480784,0.9676166,0.01661912],"study_design_scores_gemma":[0.01110841,0.0007055597,0.10727,0.009225185,0.0008971413,0.005413314,0.0008201322,0.004497772,0.002412779,0.02809343,0.8291693,0.0003869064],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.0005073501,0.00004343589,0.0006557473,0.0001663788,0.00003465522,0.0001146911,0.9972052,0.0002824968,0.000990072],"genre_scores_gemma":[0.02627986,0.0003287973,0.006806675,0.001667394,0.0003290638,0.003966935,0.9453839,0.00112654,0.01411086],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.7824745,"threshold_uncertainty_score":0.3102738,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02358341947470956,"score_gpt":0.2584255619636018,"score_spread":0.2348421424888923,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}