{"id":"W6940019900","doi":"10.6084/m9.figshare.c.7079043","title":"In silico prediction of the metabolism of Blastocrithidia nonstop, a trypanosomatid with non-canonical genetic code","year":2024,"lang":"en","type":"other","venue":"Figshare","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"","keywords":"Genetic code; In silico; NonStop; Trypanosoma brucei; Genome; Eukaryote; Model organism","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001797844,0.0009080661,0.0004970761,0.0004397832,0.0003703683,0.000786753,0.0003275318,0.0007012041,0.003548235],"category_scores_gemma":[0.0005339066,0.0002352798,0.000732775,0.0003486284,0.0001231962,0.0002468252,0.0002225428,0.0002910358,0.001019027],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003528861,"about_ca_system_score_gemma":0.0004538517,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001366413,"about_ca_topic_score_gemma":0.002199274,"domain_scores_codex":[0.9998956,0.00002573877,0.000005441895,0.00004318094,0.00001645215,0.00001351439],"domain_scores_gemma":[0.9998007,0.0001046482,0.00002975615,0.00001304995,0.00002492413,0.00002687003],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.004980867,0.0007764982,0.08148139,0.002601197,0.0009386382,0.003092596,0.0002719903,0.278186,0.5810155,0.002974708,0.006971107,0.03670951],"study_design_scores_gemma":[0.0002147377,0.001125546,0.02449689,0.00006882016,0.0004116305,0.0006772368,0.0001552659,0.8622111,0.09976542,0.001789707,0.009020026,0.00006356477],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"other","genre_scores_codex":[0.9555672,0.0006475165,0.02670126,0.0001943498,0.00007846259,0.00006661384,0.01150635,0.002596037,0.00264219],"genre_scores_gemma":[0.9261765,0.0003480513,0.04034394,0.00006323332,0.00001360801,0.00009030371,0.03118119,0.0003698574,0.001413222],"genre_candidate":"other","genre_consensus":null,"teacher_disagreement_score":0.003548235,"threshold_uncertainty_score":0.01187003,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01210999132931304,"score_gpt":0.201830549547677,"score_spread":0.189720558218364,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}