{"id":"W6940163379","doi":"10.1021/acsinfecdis.2c00548.s001","title":"Optimized Bioorthogonal\\nNon-canonical Amino Acid Tagging\\nto Identify Serotype-Specific Biomarkers in Verotoxigenic Escherichia coli","year":2023,"lang":"en","type":"article","venue":"Figshare","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"VTEC; Escherichia coli; Bioorthogonal chemistry; Pathogenic bacteria; Listeria monocytogenes; Bacteria; Proteomics; Bacterial protein; Amino acid","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003199363,0.0003901763,0.0001634879,0.0001876748,0.0001638825,0.0002632049,0.0001847687,0.0004206973,0.0005009706],"category_scores_gemma":[0.0001494021,0.000211288,0.0002276362,0.0001613795,0.0002275188,0.0001772146,0.0002312704,0.0004492399,0.0003047876],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001859903,"about_ca_system_score_gemma":0.0001620936,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004682835,"about_ca_topic_score_gemma":0.001781173,"domain_scores_codex":[0.9997835,0.00003459418,0.00001552658,0.00005333169,0.00006376627,0.00004933979],"domain_scores_gemma":[0.9999149,0.00001206685,0.00002963725,0.00001108741,0.00002069733,0.00001149551],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001837781,0.000006747819,0.00005992133,0.00001450716,0.000001779555,0.00001553699,0.000005966959,0.00004046117,0.9992601,0.00005604453,0.00002489842,0.0004956227],"study_design_scores_gemma":[0.000001886583,0.00007306316,0.0005976273,0.00000201584,0.000003201119,0.00005358368,0.000008998538,0.0005432757,0.9976442,0.00001988876,0.001047312,0.000004911475],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9568526,0.0008563958,0.03876974,0.0001555224,0.00008123814,0.0001211372,0.0004851511,0.0002233741,0.002454861],"genre_scores_gemma":[0.916488,0.001324169,0.07339615,0.0002580138,0.00001181493,0.0001331929,0.001538967,0.00007673713,0.006772952],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0005009706,"threshold_uncertainty_score":0.001692057,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04407652947839261,"score_gpt":0.2579810727405638,"score_spread":0.2139045432621712,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}