{"id":"W6942010000","doi":"10.1371/journal.pone.0266829.s003","title":"Serotypes identified using whole-genome sequence data of phenotypically resistant <i>Escherichia coli</i> isolates obtained from wildlife, swine manure pits, and environmental sources in southern Ontario, Canada, 2011−2013.","year":2022,"lang":"en","type":"article","venue":"Figshare","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Serotype; Manure; Escherichia coli; Sequence (biology); Enterobacteriaceae; Sequence analysis; Bacteria","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002287711,0.0007879027,0.0003971569,0.001594176,0.0009477627,0.0006873492,0.0003361343,0.0003680142,0.003011184],"category_scores_gemma":[0.0005969003,0.0002377849,0.0004271177,0.003919834,0.0003624572,0.000172882,0.0002775606,0.000530619,0.001575478],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002947469,"about_ca_system_score_gemma":0.00713662,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.7788839,"about_ca_topic_score_gemma":0.9089229,"domain_scores_codex":[0.9996037,0.00001120921,0.00002613781,0.0000853434,0.0001727076,0.0001010728],"domain_scores_gemma":[0.9993113,0.00003288996,0.0001625796,0.00004627985,0.0003272496,0.0001196286],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001857684,0.0002157215,0.3273194,0.001220227,0.0002928928,0.001457456,0.002162595,0.001031456,0.5756387,0.000867343,0.0496854,0.03825117],"study_design_scores_gemma":[0.00002956956,0.000112218,0.939021,0.00008364601,0.0001014287,0.0003814454,0.001341983,0.0002546688,0.007396632,0.00004756008,0.05120152,0.00002842985],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.5455046,0.001313181,0.002891409,0.0002661947,0.0001449911,0.0003955841,0.4293228,0.0002456839,0.01991553],"genre_scores_gemma":[0.4390167,0.001777404,0.01048455,0.0003989283,0.00001577303,0.000167939,0.529936,0.000125229,0.01807747],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2211161,"threshold_uncertainty_score":0.4448365,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02712936627043156,"score_gpt":0.1966766686057403,"score_spread":0.1695473023353088,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}