{"id":"W6957834918","doi":"10.60692/vp33e-gxh21","title":"Genomic Sequencing from Sputum for Tuberculosis Disease Diagnosis, Lineage Determination, and Drug Susceptibility Prediction","year":2023,"lang":"en","type":"article","venue":"Greater South Information System","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; Centre Hospitalier de l’Université de Montréal","funders":"","keywords":"Minion; Tuberculosis; Mycobacterium tuberculosis; Sputum; DNA sequencing; Drug resistance; Deep sequencing; Nanopore sequencing","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001215657,0.0003530855,0.0004921085,0.001411274,0.0003150147,0.0006695093,0.0002702348,0.00037618,0.001740644],"category_scores_gemma":[0.002746749,0.000213285,0.0003887658,0.0008671721,0.0002578353,0.0001838011,0.0003847244,0.0002618266,0.0006851364],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002564723,"about_ca_system_score_gemma":0.000615144,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001970819,"about_ca_topic_score_gemma":0.004639199,"domain_scores_codex":[0.9989094,0.0003936339,0.0001211779,0.000197672,0.0002743873,0.0001037951],"domain_scores_gemma":[0.9989412,0.0003279671,0.0002168003,0.0001640509,0.0002580583,0.00009184895],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001082895,0.0001406394,0.2475904,0.0005738366,0.0001366611,0.001093062,0.0005057853,0.001616431,0.6290218,0.0005047494,0.002111254,0.1156224],"study_design_scores_gemma":[0.0001116136,0.002009671,0.6942559,0.0004169668,0.0004165459,0.005925449,0.0007498835,0.01272522,0.2577196,0.001040579,0.0245636,0.00006481873],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9304717,0.003645221,0.05076732,0.000445781,0.0001002973,0.0006362282,0.008904163,0.0006033361,0.004426046],"genre_scores_gemma":[0.9122514,0.002104727,0.07524738,0.0005796799,0.00006068794,0.0003174316,0.007895252,0.0001432763,0.001400243],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001970819,"threshold_uncertainty_score":0.006429076,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04649207886369452,"score_gpt":0.2778382605584397,"score_spread":0.2313461816947452,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}