{"id":"W6958049890","doi":"10.6084/m9.figshare.20175983.v1","title":"Additional file 5 of The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery","year":2022,"lang":"en","type":"article","venue":"Figshare","topic":"Biomedical Text Mining and Ontologies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of New Brunswick; Ontario Institute for Cancer Research; Carleton University","funders":"","keywords":"Ontology; Knowledge extraction; File format; Key (lock); Flat file database","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001667399,0.001121883,0.001024188,0.003694969,0.0008462007,0.002465873,0.001841831,0.001256814,0.8065459],"category_scores_gemma":[0.01595084,0.0007313476,0.001369147,0.005136528,0.0004570945,0.003413325,0.001760222,0.001425894,0.2418952],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001598978,"about_ca_system_score_gemma":0.002374967,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.008616981,"about_ca_topic_score_gemma":0.01130993,"domain_scores_codex":[0.9994585,0.00008380753,0.00009383044,0.0001366488,0.0001385384,0.00008860318],"domain_scores_gemma":[0.9891877,0.007705075,0.0004886661,0.0007306053,0.001515884,0.0003721882],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.0001839434,0.00005367628,0.0006969431,0.001622181,0.00003406234,0.00006212808,0.00009509636,0.0003387428,0.0002525096,0.002364074,0.9857697,0.008526906],"study_design_scores_gemma":[0.0009962054,0.00003864392,0.003759637,0.0008635169,0.00007836145,0.0002345526,0.0002478839,0.001219163,0.001262257,0.01367217,0.9775464,0.00008117285],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":null,"genre_codex":"dataset","genre_gemma":"methods","genre_scores_codex":[0.0001347019,0.00001979524,0.001164608,0.0001457819,0.00005624837,0.00005909576,0.9941072,0.00179645,0.002516078],"genre_scores_gemma":[0.00455788,0.0001832925,0.01223753,0.0004619074,0.00008408871,0.0007517738,0.9679042,0.004351471,0.009467851],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.8065459,"threshold_uncertainty_score":0.2759388,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07351708511160826,"score_gpt":0.3383399881375442,"score_spread":0.2648229030259359,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}