{"id":"W6958132328","doi":"10.6084/m9.figshare.13046954","title":"Additional file 2 of Characterization of universal features of partially methylated domains across tissues and species","year":2020,"lang":"en","type":"article","venue":"Figshare","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"","keywords":"CpG site; Methylation; Genome; DNA methylation; Gene; Retrotransposon; Telomere; Lactobacillus crispatus","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001960406,0.001745727,0.002131003,0.003155839,0.00149241,0.00230846,0.002710075,0.00145723,0.8602894],"category_scores_gemma":[0.01878136,0.0008020316,0.00112882,0.004793993,0.000437501,0.002309487,0.00162652,0.001305311,0.2371752],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001084729,"about_ca_system_score_gemma":0.001978295,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006241203,"about_ca_topic_score_gemma":0.01046889,"domain_scores_codex":[0.9989818,0.0001221488,0.0001620629,0.0003254619,0.0002340479,0.000174499],"domain_scores_gemma":[0.9880407,0.008500102,0.0006429569,0.0009991983,0.001387336,0.0004296812],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0004208172,0.0001116634,0.002889398,0.004278679,0.000070114,0.0001341359,0.0001032324,0.0004534966,0.0006653779,0.0006491882,0.9811669,0.009056966],"study_design_scores_gemma":[0.003254345,0.0002624994,0.02509619,0.002527615,0.00019233,0.0007853889,0.0004900421,0.002365696,0.002323411,0.008770733,0.9537396,0.0001921852],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"other","genre_scores_codex":[0.0001303707,0.0000141377,0.0002885504,0.00003683269,0.00001811533,0.00003852094,0.998599,0.0004640016,0.0004104371],"genre_scores_gemma":[0.003205525,0.00007129295,0.00323351,0.0002432205,0.00004344821,0.000785049,0.9875288,0.001280528,0.003608654],"genre_candidate":"other","genre_consensus":null,"teacher_disagreement_score":0.8602894,"threshold_uncertainty_score":0.1992802,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01839671547640333,"score_gpt":0.2447408605931982,"score_spread":0.2263441451167948,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}