{"id":"W6958268862","doi":"10.6084/m9.figshare.26751272","title":"Additional file 12 of Integrative analysis of bulk and single-cell RNA sequencing reveals the gene expression profile and the critical signaling pathways of type II CPAM","year":2024,"lang":"en","type":"article","venue":"Figshare","topic":"Single-cell and spatial transcriptomics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"","keywords":"KEGG; Gene expression; RNA; Gene; Signal transduction; Table (database); Transcriptome; RNA-Seq","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00007025669,0.00009403384,0.0001846244,0.00003899047,0.00006665083,0.00001404001,0.00009133123,0.00008065963,0.0783601],"category_scores_gemma":[0.0007594764,0.00005283118,0.0001008401,0.0001419597,0.00009336073,0.0000051669,0.00007881153,0.00008199485,0.000001123041],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000005724309,"about_ca_system_score_gemma":0.0000638,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000004833633,"about_ca_topic_score_gemma":0.000003734832,"domain_scores_codex":[0.9993719,0.00006561734,0.0002034765,0.0001721532,0.000104112,0.00008276429],"domain_scores_gemma":[0.99904,0.0005750594,0.00007457923,0.0001299869,0.0001554077,0.00002498435],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005376413,0.00002351137,0.000002852201,0.0001680512,0.0001043826,9.840056e-7,0.0004465165,0.00003527579,0.9202013,0.00001104127,0.0786961,0.0002562107],"study_design_scores_gemma":[0.0001445311,0.0001997077,0.00002656211,0.001134568,0.0001345473,0.000002853247,0.0002651181,0.002780767,0.9918208,0.00007830526,0.003329371,0.00008288692],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"dataset","genre_gemma":"empirical","genre_scores_codex":[0.08522855,0.002358448,0.00003859968,0.0000264538,0.00002416555,0.0001558035,0.9110771,0.000005759417,0.001085087],"genre_scores_gemma":[0.8913713,0.00001460304,0.0005552633,0.00002833925,0.00005105671,0.00003929599,0.1078355,0.000008761667,0.00009586515],"genre_candidate":"dataset","genre_consensus":null,"teacher_disagreement_score":0.8061427,"threshold_uncertainty_score":0.9224824,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03215837039081333,"score_gpt":0.2388056166594504,"score_spread":0.206647246268637,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}