{"id":"W6958336599","doi":"10.6084/m9.figshare.14379386","title":"Additional file 3 of PCIP-seq: simultaneous sequencing of integrated viral genomes and their insertion sites with long reads","year":2021,"lang":"en","type":"article","venue":"Figshare","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Genome; Provirus; DNA sequencing; DNA Transposable Elements; DNA; Whole genome sequencing","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.002129323,0.00189675,0.001917314,0.003155188,0.00185556,0.002951922,0.003013021,0.002309248,0.6364445],"category_scores_gemma":[0.01419969,0.0009734519,0.001655451,0.005333242,0.0005778662,0.002122409,0.001715466,0.001902336,0.160967],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00107556,"about_ca_system_score_gemma":0.002218824,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007589036,"about_ca_topic_score_gemma":0.01671729,"domain_scores_codex":[0.9987622,0.0001603464,0.0001476376,0.0005100177,0.0002170008,0.0002026568],"domain_scores_gemma":[0.9907323,0.00656229,0.0005315419,0.00078949,0.001016428,0.0003680096],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0004362219,0.00010358,0.004266638,0.005226109,0.0001609292,0.00009429751,0.0001239251,0.001417723,0.001572075,0.001071288,0.9797484,0.005778776],"study_design_scores_gemma":[0.002808397,0.0002276649,0.02399908,0.002130909,0.0004029774,0.000360549,0.0004540313,0.002738226,0.003396502,0.0110198,0.9522135,0.0002483146],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"other","genre_scores_codex":[0.0001061256,0.00001210858,0.0001768956,0.00002153665,0.00001226992,0.00001832264,0.9991513,0.000257809,0.0002435299],"genre_scores_gemma":[0.002074987,0.00004411627,0.002072151,0.0001973661,0.0000236052,0.000358915,0.9933483,0.0006425773,0.001237941],"genre_candidate":"other","genre_consensus":null,"teacher_disagreement_score":0.6364445,"threshold_uncertainty_score":0.5185678,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01406132334229388,"score_gpt":0.2000471348966839,"score_spread":0.1859858115543901,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}