{"id":"W6958348022","doi":"10.6084/m9.figshare.14379392.v1","title":"Additional file 5 of PCIP-seq: simultaneous sequencing of integrated viral genomes and their insertion sites with long reads","year":2021,"lang":"en","type":"article","venue":"Figshare","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Genome; DNA sequencing; DNA Transposable Elements; Whole genome sequencing; DNA; Sequence (biology)","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.003789212,0.001404837,0.001751566,0.004028665,0.0009835894,0.002137573,0.002761578,0.001711822,0.8352457],"category_scores_gemma":[0.02587949,0.0008813282,0.00154085,0.005307639,0.0004293447,0.002500272,0.001601898,0.001487881,0.2112024],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001256081,"about_ca_system_score_gemma":0.002678652,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004498696,"about_ca_topic_score_gemma":0.006727751,"domain_scores_codex":[0.998624,0.0002904741,0.000230603,0.0003864237,0.0003353599,0.0001332135],"domain_scores_gemma":[0.9730282,0.02060935,0.001286747,0.001424833,0.002932014,0.0007188751],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003645793,0.00003881528,0.0006302033,0.008579738,0.00009314792,0.00006730681,0.00006585225,0.0004062278,0.0004549892,0.0007851809,0.9743284,0.01418555],"study_design_scores_gemma":[0.001203296,0.0001355174,0.00642596,0.003755692,0.0002483471,0.0003264072,0.0001434975,0.0006561847,0.001300591,0.005436604,0.9802478,0.0001200016],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"other","genre_scores_codex":[0.0000932595,0.0001754148,0.0008615537,0.0002429102,0.0001321605,0.0001008907,0.9964778,0.0008491403,0.001066949],"genre_scores_gemma":[0.003970056,0.0007320978,0.008274796,0.001284833,0.000335803,0.001397774,0.9689823,0.002574616,0.01244776],"genre_candidate":"other","genre_consensus":null,"teacher_disagreement_score":0.1647543,"threshold_uncertainty_score":0.235002,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01406794905806157,"score_gpt":0.2001894275886884,"score_spread":0.1861214785306269,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}