{"id":"W6958396798","doi":"10.6084/m9.figshare.20267248.v1","title":"Additional file 8 of Toward a base-resolution panorama of the in vivo impact of cytosine methylation on transcription factor binding","year":2022,"lang":"en","type":"article","venue":"Figshare","topic":"Characterization and Applications of Magnetic Nanoparticles","field":"Engineering","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; McGill Genome Centre","funders":"","keywords":"Transcription factor; In vivo; Methylation; Transcription (linguistics); Panorama; DNA methylation; DNA","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00001677531,0.00005689248,0.00008761365,0.00009343791,0.00002377087,0.000003263702,0.00008842358,0.00002213563,0.929907],"category_scores_gemma":[0.0002229444,0.0000509776,0.0000735172,0.0003516838,0.000005036988,0.0000500586,0.00001699462,0.00006325227,0.00001276539],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006652608,"about_ca_system_score_gemma":0.00002796129,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00000515827,"about_ca_topic_score_gemma":0.000002181639,"domain_scores_codex":[0.9994908,0.00002785364,0.0002009759,0.00006302407,0.0001543519,0.00006298096],"domain_scores_gemma":[0.999542,0.0002124291,0.00009263301,0.000103386,0.0000357806,0.00001377242],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001653424,0.00007528816,0.00001926275,0.00008125565,0.000009013311,8.100346e-8,0.0001725577,0.03220679,0.4652638,0.000009495043,0.5011315,0.001014335],"study_design_scores_gemma":[0.0009540217,0.000361344,0.2020103,0.001510763,0.00001468509,0.000002527002,0.0002016406,0.1267677,0.5780581,0.00005552393,0.08974769,0.000315735],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"dataset","genre_gemma":"empirical","genre_scores_codex":[0.1064289,0.000007135041,0.00000317697,0.00001502374,0.000009248814,0.0001461103,0.8932378,0.00001570256,0.0001368693],"genre_scores_gemma":[0.7981262,3.654283e-7,0.00004316372,0.000002886752,0.000007394381,0.000192839,0.2015968,0.000006773764,0.00002359807],"genre_candidate":"dataset","genre_consensus":null,"teacher_disagreement_score":0.9298943,"threshold_uncertainty_score":0.2078806,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02975293454527067,"score_gpt":0.2297477066464462,"score_spread":0.1999947721011756,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}