{"id":"W6958512110","doi":"10.6084/m9.figshare.26557955.v1","title":"Additional file 1 of Prevalence of pks + bacteria and enterotoxigenic Bacteroides fragilis in patients with colorectal cancer","year":2024,"lang":"en","type":"article","venue":"Figshare","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; Centre Hospitalier de l’Université de Montréal","funders":"","keywords":"Bacteroides fragilis; Colorectal cancer; Bacteria; Bacteroidaceae; Anaerobic bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00001361763,0.0000636057,0.00007303897,0.00002765461,0.00001029573,0.00001465209,0.00006196164,0.00005079457,0.833034],"category_scores_gemma":[0.0004459495,0.00005729128,0.00002255493,0.00005683942,0.00001629668,0.000008302678,0.00004814985,0.00003642497,0.00001242467],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00000776671,"about_ca_system_score_gemma":0.00005889784,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000005456998,"about_ca_topic_score_gemma":0.00005207959,"domain_scores_codex":[0.9995299,0.000020918,0.0001391585,0.0001822473,0.00005954915,0.00006820173],"domain_scores_gemma":[0.9996736,0.00007285384,0.00005760354,0.00008309721,0.00009043879,0.00002242274],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"observational","study_design_scores_codex":[0.0001078463,0.00008207139,0.01356278,0.001161014,0.00003528103,5.828022e-7,0.00006739615,8.360402e-7,0.08305732,3.731587e-7,0.8997383,0.002186182],"study_design_scores_gemma":[0.000140104,0.0001313005,0.9499363,0.002153155,0.000003743863,6.416958e-7,0.000005443951,0.00002038349,0.01580201,0.000001512678,0.03172785,0.0000775341],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"dataset","genre_gemma":"empirical","genre_scores_codex":[0.4409888,0.00003311738,3.333064e-8,0.000001362315,0.000008611766,0.00008286598,0.5588543,0.000002777669,0.00002812749],"genre_scores_gemma":[0.5549235,0.000001981894,0.0000688496,0.000005366522,0.00001856501,0.0002035679,0.4446531,0.00000567425,0.0001193532],"genre_candidate":"dataset","genre_consensus":null,"teacher_disagreement_score":0.9363735,"threshold_uncertainty_score":0.233627,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008847995386735408,"score_gpt":0.2230903738769333,"score_spread":0.2142423784901979,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}