{"id":"W6958581924","doi":"10.6084/m9.figshare.c.6028415","title":"Evaluating the potential of third generation metagenomic sequencing for the detection of BRD pathogens and genetic determinants of antimicrobial resistance in chronically ill feedlot cattle","year":2022,"lang":"en","type":"other","venue":"Figshare","topic":"Pasture and Agricultural Systems","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta; University of Saskatchewan","funders":"","keywords":"Metagenomics; Bovine respiratory disease; Antibiotic resistance; DNA sequencing; Drug resistance; Antimicrobial; Nanopore sequencing; Pasteurella multocida","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00015417,0.0001198763,0.0002469163,0.00001217147,0.0001065816,0.0000138467,0.0002194752,0.0001009562,0.002016043],"category_scores_gemma":[0.0001471927,0.0000378469,0.0001008264,0.0001353548,0.00001803105,0.00001880782,0.00007503593,0.0000831668,0.000001210027],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000362612,"about_ca_system_score_gemma":0.00002325792,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005366447,"about_ca_topic_score_gemma":0.01757962,"domain_scores_codex":[0.9990689,0.0001313801,0.0003194821,0.0002000718,0.0001588937,0.0001212818],"domain_scores_gemma":[0.9991418,0.0001536827,0.0005498983,0.00006778351,0.00007427458,0.0000126001],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00001406165,0.000008077529,0.00002968632,0.0001688578,0.00001818734,4.388983e-7,0.00005604705,0.0001296404,0.9849159,2.084794e-7,0.006845608,0.007813313],"study_design_scores_gemma":[0.001768147,0.002164276,0.6512259,0.006472334,0.0006991858,0.00009613775,0.001501489,0.004900953,0.2332752,0.00002900698,0.09629228,0.001575038],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9244226,0.007893867,0.000001676804,0.00007895603,0.0001591485,0.001774809,0.06530129,0.00001511567,0.0003525994],"genre_scores_gemma":[0.9946765,0.00006419119,0.00006423462,0.00002059477,0.0003821875,0.0001488875,0.002624582,0.000006503006,0.002012294],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7516407,"threshold_uncertainty_score":0.9988962,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05930974229297582,"score_gpt":0.2642483381995215,"score_spread":0.2049385959065457,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}