{"id":"W6958590018","doi":"10.6084/m9.figshare.20488815.v1","title":"Additional file 4 of Systematic profiling of the chicken gut microbiome reveals dietary supplementation with antibiotics alters expression of multiple microbial pathways with minimal impact on community structure","year":2022,"lang":"en","type":"article","venue":"Figshare","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph; University of Alberta; SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Microbiome; Antibiotics; Microbial population biology; Gut microbiome; Gene expression profiling; Metagenomics; Metabolic pathway; Enzyme","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001376443,0.0014521,0.001486907,0.002901516,0.001285577,0.001833951,0.002141946,0.00158073,0.8458974],"category_scores_gemma":[0.01558373,0.0007333087,0.001239208,0.003934233,0.0003689454,0.001721511,0.001406,0.001061283,0.1634483],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009693464,"about_ca_system_score_gemma":0.002123824,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007597668,"about_ca_topic_score_gemma":0.01433899,"domain_scores_codex":[0.9992009,0.00008587368,0.000107997,0.0002392007,0.0002352245,0.0001307962],"domain_scores_gemma":[0.9885315,0.007930273,0.0006760979,0.0007102393,0.001777688,0.0003742876],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"observational","study_design_scores_codex":[0.0005105858,0.0001964364,0.004309318,0.007492965,0.000125086,0.0001408204,0.0001350922,0.0006959846,0.001505853,0.0006864033,0.9736539,0.01054755],"study_design_scores_gemma":[0.006296349,0.0006587787,0.06644316,0.005274371,0.0005139119,0.0008315839,0.0008706891,0.004196095,0.005517178,0.01035624,0.8986934,0.0003482103],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.0002399694,0.00001661372,0.0002898683,0.00005437818,0.00002809207,0.00004682219,0.9984049,0.000491609,0.0004278711],"genre_scores_gemma":[0.007304784,0.0001200732,0.006645176,0.0004390323,0.0000715108,0.001347622,0.9758555,0.001261613,0.00695468],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.8458974,"threshold_uncertainty_score":0.2198087,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05040601559965632,"score_gpt":0.2885784452721594,"score_spread":0.238172429672503,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}